Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Computational chemistry4
    • Assembly2
    • Biological sequences2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • DNA variation1
    • Genetic variation1
    • Genomic variation1
    • Metagenomics1
    • Mutation1
    • Polymorphism1
    • Shotgun metagenomics1
    • Somatic mutations1
    • Show N_FILTERS more
    • Tool
    • seqtk
    • The Protein Data Bank (PDB)
    • Galaxy325
    • FastQC32
    • SAMtools27
    • Bioconductor23
    • MultiQC22
    • BWA20
    • fastp17
    • BEDTools15
    • scikit-learn15
    • Cutadapt14
    • Data Stewardship Wizard14
    • JBrowse14
    • SCANPY14
    • BLAST12
    • DeepTools12
    • STAR11
    • BUSCO10
    • QUAST10
    • ggplot210
    • Falco9
    • FreeBayes9
    • GEMINI9
    • taxonomy_krona_chart9
    • NanoPlot8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • BamTools7
    • FASTX-Toolkit7
    • Galaxy Image Analysis7
    • HISAT27
    • RStudio7
    • msConvert7
    • scikit-image7
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • Workflow4Metabolomics6
    • gffread6
    • Bowtie 25
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • xcms5
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • SRA Software Toolkit4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDb3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
    • Ontology Lookup Service3
    • QualiMap3
    • R3
    • RDKit3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • UCSC Genome Browser Utilities3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training10
    • Show N_FILTERS more
    • Keyword
    • Computational chemistry4
    • Assembly2
    • Sequence analysis2
    • covid192
    • Contributing to the Galaxy Training Material1
    • Variant Analysis1
    • assembly1
    • biodiversity1
    • computational-chemistry1
    • data-management1
    • fair1
    • medicinal-chemistry1
    • metagenomics1
    • microgalaxy1
    • one-health1
    • virology1
    • Show N_FILTERS more
    • Difficulty level
    • Intermediate5
    • Beginner4
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International10
    • Show N_FILTERS more
    • Target audience
    • Students9
    • Instructors1
    • Show N_FILTERS more
    • Author
    • Simon Bray3
    • Wolfgang Maier3
    • Bérénice Batut2
    • Björn Grüning1
    • Christopher Barnett1
    • Coline Royaux1
    • Helena Rasche1
    • Julia Jakiela1
    • Katarzyna Kamieniecka1
    • Krzysztof Poterlowicz1
    • Lucille Delisle1
    • Polina Polunina1
    • Saskia Hiltemann1
    • Tharindu Senapathi1
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche9
    • Saskia Hiltemann9
    • Björn Grüning6
    • Bérénice Batut5
    • Simon Bray5
    • Wolfgang Maier4
    • Christopher Barnett3
    • Simon Gladman3
    • Anthony Bretaudeau2
    • Gildas Le Corguillé2
    • Anton Nekrutenko1
    • Armin Dadras1
    • Catherine Bromhead1
    • Khaled Jum'ah1
    • Martin Čech1
    • Nadia Goué1
    • Niall Beard1
    • Nicola Soranzo1
    • Polina Polunina1
    • Stéphanie Robin1
    • Tharindu Senapathi1
    • Wendi Bacon1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning10
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows9
    • Associated Training Datasets5
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: The Protein Data Bank (PDB) or seqtk

10 materials found
  • e-learning

    Removal of human reads from SARS-CoV-2 sequencing data

    •• intermediate
    Sequence analysis covid19
  • e-learning

    Assembly of metagenomic sequencing data

    • beginner
    Sequence assembly Metagenomics Assembly assembly metagenomics microgalaxy
  • e-learning

    Avian influenza viral strain analysis from gene segment sequencing data

    •• intermediate
    Genetic variation Variant Analysis one-health virology
  • e-learning

    Data management in Medicinal Chemistry

    • beginner
    Computational chemistry computational-chemistry data-management fair medicinal-chemistry
  • e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• intermediate
    Sequence assembly Assembly biodiversity covid19
  • e-learning

    Creating a new tutorial

    • beginner
    Contributing to the Galaxy Training Material
  • e-learning

    Clean and manage Sanger sequences from raw files to aligned consensus

    • beginner
    Sequence analysis
  • e-learning

    High Throughput Molecular Dynamics and Analysis

    ••• advanced
    Computational chemistry
  • e-learning

    Protein-ligand docking

    •• intermediate
    Computational chemistry
  • e-learning

    Running molecular dynamics simulations using GROMACS

    •• intermediate
    Computational chemistry
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.