Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Metagenomics2
    • Shotgun metagenomics2
    • Antimicrobial stewardship1
    • Assembly1
    • Biological sequences1
    • DNA variation1
    • Exomes1
    • Genetic variation1
    • Genome annotation1
    • Genomes1
    • Genomic variation1
    • Genomics1
    • Medical microbiology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Molecular infection biology1
    • Molecular microbiology1
    • Mutation1
    • Personal genomics1
    • Polymorphism1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Somatic mutations1
    • Synthetic genomics1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • compute_sequence_length
    • MGnify (was EBI Metagenomics)
    • Galaxy324
    • FastQC32
    • SAMtools27
    • Bioconductor23
    • MultiQC22
    • BWA20
    • fastp17
    • BEDTools15
    • scikit-learn15
    • Cutadapt14
    • Data Stewardship Wizard14
    • SCANPY14
    • JBrowse13
    • BLAST12
    • DeepTools12
    • QUAST10
    • STAR10
    • ggplot210
    • BUSCO9
    • Falco9
    • FreeBayes9
    • GEMINI9
    • taxonomy_krona_chart9
    • NanoPlot8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • BamTools7
    • FASTX-Toolkit7
    • Galaxy Image Analysis7
    • HISAT27
    • RStudio7
    • msConvert7
    • scikit-image7
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • Workflow4Metabolomics6
    • seqtk6
    • Bowtie 25
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • annotatemyids5
    • gffcompare5
    • gffread5
    • xcms5
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • SRA Software Toolkit4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDb3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • Ontology Lookup Service3
    • QualiMap3
    • R3
    • RDKit3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • UCSC Genome Browser Utilities3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • bx-python3
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training5
    • European Bioinformatics Institute (EBI)3
    • Show N_FILTERS more
    • Keyword
    • 10x2
    • MGnify2
    • Metagenomics2
    • Microbiology2
    • Sequence Analysis2
    • Single Cell2
    • epigenetics2
    • virology2
    • Assembly1
    • Sequence analysis1
    • Variant Analysis1
    • gmod1
    • jbrowse11
    • microgalaxy1
    • one-health1
    • prokaryote1
    • single-cell1
    • Show N_FILTERS more
    • Difficulty level
    • Not specified3
    • Beginner2
    • Intermediate2
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International5
    • Creative Commons Attribution Non Commercial Share Alike 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students5
    • Life Scientists2
    • Show N_FILTERS more
    • Author
    • Alex Mitchell2
    • Timon Schlegel2
    • Wolfgang Maier2
    • Anton Nekrutenko1
    • Delphine Lariviere1
    • Elischa Berger1
    • Guillermo Rangel Pineros1
    • Helena Rasche1
    • Rebecca Campos1
    • Rob Finn1
    • Tomas Klingström1
    • Varsha Kale1
    • Verena Moosmann1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann4
    • Alex Mitchell2
    • Anton Nekrutenko2
    • Björn Grüning2
    • Helena Rasche2
    • Timon Schlegel2
    • Wolfgang Maier2
    • Anthony Bretaudeau1
    • Armin Dadras1
    • Bérénice Batut1
    • Diana Chiang Jurado1
    • Guillermo Rangel Pineros1
    • Maria Doyle1
    • Martin Čech1
    • Niall Beard1
    • Nicola Soranzo1
    • Pavankumar Videm1
    • Rebecca Campos1
    • Rob Finn1
    • Varsha Kale1
    • Verena Moosmann1
    • Wendi Bacon1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • Tutorial1
    • Webinar1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows5
    • Associated Training Datasets4
    • Show N_FILTERS more
    • Node
    • EMBL-EBI3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: compute_sequence_length or MGnify (was EBI Metagenomics)

8 materials found
  • e-learning

    Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes

    • beginner
    Sequence analysis virology
  • e-learning

    Multi-sample batch correction with Harmony and SnapATAC2

    •• intermediate
    10x Single Cell epigenetics
  • e-learning

    Single-cell ATAC-seq standard processing with SnapATAC2

    •• intermediate
    10x Single Cell epigenetics single-cell
  • e-learning

    Making sense of a newly assembled genome

    • beginner
    Sequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
  • e-learning

    Pox virus genome analysis from tiled-amplicon sequencing data

    ••• advanced
    Genetic variation Variant Analysis one-health virology
  • Tutorial

    Metagenomics Bioinformatics

    ELIXIR node event
    Metagenomics MGnify Sequence Analysis Microbiology
  • Webinar

    EBI Metagenomics: analysing and exploring metagenomics data

    ELIXIR node event
    Metagenomics MGnify Sequence Analysis Microbiology
  • Analysing and visualising microbiome-derived datasets using the MGnify Web API

    ELIXIR node event
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.