Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Exomes4
    • Genome annotation4
    • Genomes4
    • Genomics4
    • Personal genomics4
    • Synthetic genomics4
    • Viral genomics4
    • Whole genomes4
    • Animal2
    • Animal biology2
    • Animal genetics2
    • Animal physiology2
    • Animals2
    • Assembly2
    • Biodiversity2
    • Botany2
    • Comparative transcriptomics2
    • Entomology2
    • Metazoa2
    • Plant2
    • Plant anatomy2
    • Plant biology2
    • Plant cell biology2
    • Plant ecology2
    • Plant genetics2
    • Plant physiology2
    • Plant science2
    • Plants2
    • Sequence assembly2
    • Transcriptome2
    • Transcriptomics2
    • Zoology2
    • Show N_FILTERS more
    • Tool
    • gffread
    • InterMine
    • Galaxy325
    • FastQC32
    • SAMtools27
    • Bioconductor23
    • MultiQC22
    • BWA20
    • fastp17
    • BEDTools15
    • scikit-learn15
    • Cutadapt14
    • Data Stewardship Wizard14
    • JBrowse14
    • SCANPY14
    • BLAST12
    • DeepTools12
    • STAR11
    • BUSCO10
    • QUAST10
    • ggplot210
    • Falco9
    • FreeBayes9
    • GEMINI9
    • taxonomy_krona_chart9
    • NanoPlot8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • BamTools7
    • FASTX-Toolkit7
    • Galaxy Image Analysis7
    • HISAT27
    • RStudio7
    • msConvert7
    • scikit-image7
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • Workflow4Metabolomics6
    • seqtk6
    • Bowtie 25
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • xcms5
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • SRA Software Toolkit4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDb3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
    • Ontology Lookup Service3
    • QualiMap3
    • R3
    • RDKit3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • UCSC Genome Browser Utilities3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training6
    • InterMine3
    • Show N_FILTERS more
    • Keyword
    • Genome Annotation4
    • FAIR3
    • biodiversity3
    • eukaryota3
    • jbrowse13
    • Braker32
    • Data analysis2
    • Data download2
    • Data querying2
    • Transcriptomics2
    • Data integration1
    • Data publishing1
    • Helixer1
    • alternative splicing1
    • data visualization1
    • eukaryote1
    • helixer1
    • isoform switching1
    • Show N_FILTERS more
    • Difficulty level
    • Intermediate5
    • Beginner3
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International7
    • License Not Specified2
    • Show N_FILTERS more
    • Target audience
    • Students6
    • Bioinformaticians3
    • Life Science Researchers2
    • software engineers1
    • Show N_FILTERS more
    • Author
    • Julie Sullivan3
    • Rachel Lyne3
    • Romane LIBOUBAN3
    • Yo Yehudi3
    • Anthony Bretaudeau2
    • Cristóbal Gallardo2
    • Daniela Butano2
    • Gos Micklem2
    • Justin Clark-Casey2
    • Kevin Herald Reierskog2
    • Sergio Contrino2
    • Lucille Delisle1
    • Stéphanie Robin1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning5
    • Helena Rasche4
    • Saskia Hiltemann4
    • Anthony Bretaudeau3
    • Bérénice Batut2
    • Cristóbal Gallardo2
    • Deepti Varshney2
    • Lucille Delisle2
    • Romane LIBOUBAN2
    • Wolfgang Maier2
    • Felicitas Kindel1
    • Pavankumar Videm1
    • Teresa Müller1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • Documentation2
    • Tutorial1
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets6
    • Associated Workflows6
    • Show N_FILTERS more
    • Node
    • United Kingdom3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: gffread or InterMine

9 materials found
  • e-learning

    Comparison of two annotation tools - Helixer and Braker3

    •• intermediate
    Genomics Sequence assembly Braker3 Genome Annotation Helixer biodiversity eukaryota jbrowse1
  • e-learning

    Genome annotation with Braker3

    •• intermediate
    Genomics Sequence assembly Biodiversity Zoology Plant biology Braker3 Genome Annotation biodiversity eukaryota jbrowse1
  • e-learning

    Genome annotation with Helixer

    •• intermediate
    Genomics Biodiversity Zoology Plant biology Genome Annotation biodiversity eukaryota helixer jbrowse1
  • e-learning

    Genome-wide alternative splicing analysis

    ••• advanced
    Transcriptomics alternative splicing isoform switching
  • e-learning

    Long non-coding RNAs (lncRNAs) annotation with FEELnc

    •• intermediate
    Genomics Genome Annotation eukaryote
  • slides

    Identification of non-canonical ORFs and their potential biological function

    • beginner
    Transcriptomics
  • Tutorial

    InterMine user tutorial

    ELIXIR node event
    • beginner
    Data querying Data analysis Data download FAIR
  • Documentation

    InterMine user manual

    ELIXIR node event
    • beginner
    Data querying data visualization Data download FAIR
  • Documentation

    InterMine operator manual

    ELIXIR node event
    •• intermediate
    Data integration Data analysis Data publishing FAIR
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.