Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Exomes5
    • Genome annotation5
    • Genomes5
    • Genomics5
    • Personal genomics5
    • Synthetic genomics5
    • Viral genomics5
    • Whole genomes5
    • Animal2
    • Animal biology2
    • Animal genetics2
    • Animal physiology2
    • Animals2
    • Biodiversity2
    • Botany2
    • Comparative transcriptomics2
    • Entomology2
    • Metazoa2
    • Plant2
    • Plant anatomy2
    • Plant biology2
    • Plant cell biology2
    • Plant ecology2
    • Plant genetics2
    • Plant physiology2
    • Plant science2
    • Plants2
    • Transcriptome2
    • Transcriptomics2
    • Zoology2
    • Assembly1
    • Computational ecology1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Function analysis1
    • Functional analysis1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Protein families1
    • Protein function analysis1
    • Protein function prediction1
    • Protein sequence classification1
    • Protein sequence features1
    • Protein sites, features and motifs1
    • Sequence assembly1
    • Signal peptide cleavage sites1
    • Show N_FILTERS more
    • Tool
    • gffread
    • InterProScan (EBI)
    • Galaxy324
    • FastQC32
    • SAMtools27
    • Bioconductor23
    • MultiQC22
    • BWA20
    • fastp17
    • BEDTools15
    • scikit-learn15
    • Cutadapt14
    • Data Stewardship Wizard14
    • SCANPY14
    • JBrowse13
    • BLAST12
    • DeepTools12
    • QUAST10
    • STAR10
    • ggplot210
    • BUSCO9
    • Falco9
    • FreeBayes9
    • GEMINI9
    • taxonomy_krona_chart9
    • NanoPlot8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • BamTools7
    • FASTX-Toolkit7
    • Galaxy Image Analysis7
    • HISAT27
    • RStudio7
    • msConvert7
    • scikit-image7
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • Workflow4Metabolomics6
    • seqtk6
    • Bowtie 25
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • xcms5
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • SRA Software Toolkit4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDb3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • MGnify (was EBI Metagenomics)3
    • Ontology Lookup Service3
    • QualiMap3
    • R3
    • RDKit3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • UCSC Genome Browser Utilities3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • bx-python3
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training8
    • Show N_FILTERS more
    • Keyword
    • Genome Annotation5
    • biodiversity5
    • eukaryote3
    • jbrowse13
    • Transcriptomics2
    • eukaryota2
    • Braker31
    • Ecology1
    • alternative splicing1
    • earth-system1
    • gmod1
    • helixer1
    • isoform switching1
    • marine omics1
    • ocean1
    • Show N_FILTERS more
    • Difficulty level
    • Intermediate4
    • Beginner3
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International8
    • Show N_FILTERS more
    • Target audience
    • Students8
    • Show N_FILTERS more
    • Author
    • Anthony Bretaudeau4
    • Cristóbal Gallardo2
    • Romane LIBOUBAN2
    • Lucille Delisle1
    • Marie Josse1
    • Stéphanie Robin1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning7
    • Saskia Hiltemann7
    • Helena Rasche6
    • Bérénice Batut4
    • Anthony Bretaudeau3
    • Cristóbal Gallardo3
    • Deepti Varshney2
    • Lucille Delisle2
    • Romane LIBOUBAN2
    • Wolfgang Maier2
    • Alexandre Cormier1
    • Erwan Corre1
    • Felicitas Kindel1
    • Jonathan Kreplak1
    • Laura Leroi1
    • Pavankumar Videm1
    • Simon Bray1
    • Stéphanie Robin1
    • Teresa Müller1
    • Show N_FILTERS more
    • Resource type
    • e-learning7
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows8
    • Associated Training Datasets7
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: gffread or InterProScan (EBI)

8 materials found
  • e-learning

    Genome annotation with Braker3

    •• intermediate
    Genomics Sequence assembly Biodiversity Zoology Plant biology Braker3 Genome Annotation biodiversity eukaryota jbrowse1
  • e-learning

    Genome annotation with Helixer

    •• intermediate
    Genomics Biodiversity Zoology Plant biology Genome Annotation biodiversity eukaryota helixer jbrowse1
  • e-learning

    Marine Omics identifying biosynthetic gene clusters

    • beginner
    Ecology biodiversity earth-system marine omics ocean
  • e-learning

    Genome-wide alternative splicing analysis

    ••• advanced
    Transcriptomics alternative splicing isoform switching
  • e-learning

    Functional annotation of protein sequences

    • beginner
    Genomics Function analysis Protein sites, features and motifs Genome Annotation biodiversity eukaryote
  • e-learning

    Genome annotation with Funannotate

    •• intermediate
    Genomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1
  • e-learning

    Long non-coding RNAs (lncRNAs) annotation with FEELnc

    •• intermediate
    Genomics Genome Annotation eukaryote
  • slides

    Identification of non-canonical ORFs and their potential biological function

    • beginner
    Transcriptomics
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.