Training materials
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e-learning
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates
•• intermediateGenetic variation Variant Analysis -
e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• beginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
e-learning
RAD-Seq Reference-based data analysis
• beginnerEcology EBV dataset EBV workflow Genetic composition EBV class RAD-seq Species population EBV class biodiversity -
e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19 -
e-learning
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1