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Showing 30 materials out of 145
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hands-on tutorial, slides, test?
TeSS Test - Complete Material Example
•• intermediateSequence analysis Sequence generation material example keywords -
Train the trainer
• beginnerComputational biology Bioinformatics training pedagogy -
Introduction to R: A software environment for statistical computing
• beginnerStatistics and probability Software engineering John Innes Centre JIC -
Introduction to RNA-Seq Using Galaxy: Studying the transcriptome
•• intermediateRNA RNA-Seq John Innes Centre JIC -
Introduction to Perl: Programming for bioinformatics
• beginnerSoftware engineering perl John Innes Centre JIC -
Introduction to Linux: The operating system for bioinformatics
• beginnerJohn Innes Centre JIC -
R for Genomics
Genomics IBERS Institute of Biological, Environmental and Rural Sciences
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Unix and Perl primers for biologists
• beginnerIBERS Institute of Biological, Environmental and Rural Sciences -
Mapping reads on Galaxy server
Galaxy IBERS Institute of Biological, Environmental and Rural Sciences
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QC or not QC Data is the question
Quality affairs IBERS Institute of Biological, Environmental and Rural Sciences
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Introduction to Mixed Models
• beginnerMixed models Roslin Institute -
Introduction to Sample Size Calculation
• beginnerSample size Roslin Institute -
Summarising Data
• beginnerSummarising data Roslin Institute -
A Brief Introduction to R
• beginnerR language Roslin Institute -
Introduction to Experimental Design
• beginnerExperimental design Roslin Institute -
Graphical & Computational Modelling of Biological Pathways
• beginnerGraphical modelling Computational modelling Roslin Institute -
Introduction to R
• beginnerSoftware engineering R programming Babraham Institute -
SAS Introduction
• beginnerSAS Roslin Institute -
An Introduction to Unix
• beginnerUnix Babraham Institute -
Phylogenetics & Phylogeography Practical (Advanced Analytical Methods)
••• advancedPhylogenetics Phylogeography Roslin Institute -
Plotting complex figures with R
•• intermediateGraph plotting R Programming Babraham Institute -
An Introduction to ggplot
•• intermediateggPlot Babraham Institute -
Statistical Analysis using GraphPad Prism
• beginnerGraphPad Prism Babraham Institute -
Scientific Figure Design
Data visualisation Figure design Babraham Institute
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Statistical Analysis using SPSS
• beginnerStatistics and probability Babraham Institute -
Sample size estimation
• beginnerPower analysis Sample size Babraham Institute -
Phylogenetic analysis of pathogens: Staphylococcus aureus, host switching and antibiotic resistance
Phylogenetic analysis Roslin Institute
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Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Phylogenetics & Phylogeography (Advanced Analytical Methods)
••• advancedPhylogenetics Roslin Institute -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR
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NGS Registry
GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.
60 training materialsNGS Registry https://microasp.upsc.se/ngs_trainers/Materials/wikis/home https://dev.tess.elixir-europe.org/content_providers/ngs-registry GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis. -
University of Cambridge Bioinformatics Training
We offer a broad range of undergraduate and postgraduate hands-on training courses focused on bioinformatics and computational biology. These training activities aim at enabling life scientists to effectively handle and interpret biological data.
4 training materials0 events (536 past events)University of Cambridge Bioinformatics Training http://training.csx.cam.ac.uk/bioinformatics/ https://dev.tess.elixir-europe.org/content_providers/university-of-cambridge-bioinformatics-training We offer a broad range of undergraduate and postgraduate hands-on training courses focused on bioinformatics and computational biology. These training activities aim at enabling life scientists to effectively handle and interpret biological data. /system/content_providers/images/000/000/057/original/logo.png?1477998653 -
Bioinformatics and Biomathematics Training Hub
The Bioinformatics and Biomathematics Training Hub (BBTH) is a BBSRC-funded collaborative project to coordinate the development and sharing of training materials and expertise across the UK’s National Institutes of Bioscience (NIB — http://www.nib.ac.uk/) for the increasingly important areas of...
62 training materialsBioinformatics and Biomathematics Training Hub http://www.earlham.ac.uk/bbsrc-bioinformatics-and-biomathematics-training-hub https://dev.tess.elixir-europe.org/content_providers/bioinformatics-and-biomathematics-training-hub The Bioinformatics and Biomathematics Training Hub (BBTH) is a BBSRC-funded collaborative project to coordinate the development and sharing of training materials and expertise across the UK’s National Institutes of Bioscience (NIB — http://www.nib.ac.uk/) for the increasingly important areas of bioinformatics and biomathematics. Guided by our NIB partners, researcher surveys, and interactions with interested bodies such as Elixir-UK, we will work to ensure that best use is made of existing assets and capabilities, that best practice is shared across the NIB, and that redundant effort is minimised going forwards. /system/content_providers/images/000/000/061/original/BBTH_logo.png?1480508618 -
NEOF Training
Bioinformatics courses
We provide training courses to support a range of capabilities including, for example, genome assembly, metabarcoding, population genomics and RNA sequencing. We aim to support the training that is in most demand from our community.These are some of the training...
0 events (5 past events)NEOF Training https://neof.org.uk/training/ https://dev.tess.elixir-europe.org/content_providers/neof-training Bioinformatics courses We provide training courses to support a range of capabilities including, for example, genome assembly, metabarcoding, population genomics and RNA sequencing. We aim to support the training that is in most demand from our community. These are some of the training courses we are running online in 2021 and 2022. Our plan is to deliver these courses online until further notice, and we hope to be running workshops in person in future. Registration closes on Monday at noon 2 weeks prior to the start of each course; selected attendees are then invited to confirm their attendance. If you have not heard from us then, please check your spam folder in case the message is there. /system/content_providers/images/000/000/638/original/neof.png?1644251203 -
Edinburgh Genomics
The explosion in new sequencing technologies has changed genomics from being the province of a few to being a key part in many research programmes. To enable researchers to analyse their next generation sequencing data themselves, Edinburgh Genomics offers a range of hands-on bioinformatics...
0 events (12 past events)Edinburgh Genomics https://genomics.ed.ac.uk https://dev.tess.elixir-europe.org/content_providers/edinburgh-genomics The explosion in new sequencing technologies has changed genomics from being the province of a few to being a key part in many research programmes. To enable researchers to analyse their next generation sequencing data themselves, Edinburgh Genomics offers a range of hands-on bioinformatics workshops. /system/content_providers/images/000/000/076/original/unnamed.png?1494410486 -
University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH)
The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and...
0 events (2 past events)University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH) https://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/bbash https://dev.tess.elixir-europe.org/content_providers/university-of-leicester-bioinformatics-and-biostatistics-analysis-support-hub-bbash The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and 3 day hands-on, NGS analysis workshops designed specificially to meet the needs of laboratory based researchers with little or no experience of NGS data analysis and command line tools. The workshops are held at the University of Leicester's state of the art College Court Conference Centre and consist of introductory presentations followed by practical sessions where delegates will gain hands-on experience of analysing and interpreting real data. The BBASH trainers are University of Leicester bioinformaticians or researchers with many years experience in bioinformatics and bioinformatics training, having delivered many workshops across the UK and Europe. /system/content_providers/images/000/000/086/original/BBASHlogo.png?1509536575 -
Birmingham Metabolomics Training Centre
Providing training to empower the next generation of metabolomics researchers.
The Birmingham Metabolomics Training Centre provides training to the metabolomics community in both analytical and computational methods. The training centre partners with both the Phenome Centre Birmingham and the...
0 events (26 past events)Birmingham Metabolomics Training Centre https://www.birmingham.ac.uk/facilities/metabolomics-training-centre/course-list.aspx https://dev.tess.elixir-europe.org/content_providers/birmingham-metabolomics-training-centre Providing training to empower the next generation of metabolomics researchers. The Birmingham Metabolomics Training Centre provides training to the metabolomics community in both analytical and computational methods. The training centre partners with both the Phenome Centre Birmingham and the NERC Biomolecular Analysis Facility to provide vocational training courses in clinical and environmental metabolomics. We offer a combination of both face-to-face and online courses. The Birmingham Metabolomics Training Centre is directed by Dr Warwick Dunn, Professor Mark Viant, Dr Ralf Weber and Dr Catherine Winder. /system/content_providers/images/000/000/084/original/12106_BMTC_lock-up_AW-01.jpg?1508159124 -
Earlham Institute
The Earlham Institute (EI) is a research institute focused on exploring living systems by applying computational science and biotechnology to answer ambitious biological questions and generate enabling resources.
0 events (7 past events)Earlham Institute https://www.earlham.ac.uk/ https://dev.tess.elixir-europe.org/content_providers/earlham-institute The Earlham Institute (EI) is a research institute focused on exploring living systems by applying computational science and biotechnology to answer ambitious biological questions and generate enabling resources. /system/content_providers/images/000/000/145/original/Earlham_Square.png?1612798057 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (1 past event)Jalview http://www.jalview.org/ https://dev.tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
InterMine
InterMine integrates biological data sources, making it easy to query and analyse data.
8 training materialsInterMine http://intermine.org https://dev.tess.elixir-europe.org/content_providers/intermine InterMine integrates biological data sources, making it easy to query and analyse data. /system/content_providers/images/000/000/095/original/intermine-300x37.png?1530283825 -
FAIRsharing
FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on...
1 training materialFAIRsharing https://www.fairsharing.org https://dev.tess.elixir-europe.org/content_providers/fairsharing FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on FAIRsharing, you not only gain credit for your work, but you increase its visibility outside of your direct domain, so reducing the potential for unnecessary reinvention and proliferation of standards and databases. /system/content_providers/images/000/000/109/original/FAIRsharing_logo.png?1544089458 -
UCL Engineering
Our research is shaping the future of engineering - and of society. Find out more about the impact we make.
0 events (1 past event)UCL Engineering https://bit.ly/3OzH0Vu https://dev.tess.elixir-europe.org/content_providers/ucl-engineering Our research is shaping the future of engineering - and of society. Find out more about the impact we make. /system/content_providers/images/000/000/646/original/UCL_logo.png?1673039782
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