Workflows
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Protein Structure Modelling
This is the a workflow of protein modelling.
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READemption
READemption is a pipeline for the computational evaluation of RNA-Seq data. It was originally developed to process dRNA-Seq reads (as introduced by Sharma et al., Nature, 2010 (Pubmed)) originating from bacterial samples. Meanwhile is has been extended to process data generated in different...
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RNA-seq summarization with annotated genome
Basic workflow for RNA-seq analysis to get to a count table.
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Structural bioinformatics workflow
A workflow with suggested common stages taken in structural bioinformatics
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Text mining and annotation
Natural language processing (http://edamontology.org/topic_0218)
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Text mining and annotation (more detail)
Natural language processing (http://edamontology.org/topic_0218)
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TRUFA RNAseq
TRUFA (Transcriptomes User-Friendly Analysis) is a free webserver designed to help you perform RNA-seq analysis.
So far, TRUFA is allowing you to execute the following steps (programs used are specified in the parentheses):
Reads cleaning:
Reads quality control (FASTQC)
Quality trimming...
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