European Bioinformatics Institute (EBI)

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PhenoMeNal: accessing metabolomics workflows in Galaxy

• beginner
Metabolomics Chemical biology Galaxy
e-learning

Data-driven plant sciences: A curated collection of EMBL-EBI on-demand training

Plant biology Machine learning Data architecture, analysis and design Database management Genotype and phenotype Data standards Spatial transcriptomics
e-learning

Methods and resources for omics studies: A curated collection of EMBL-EBI on-demand training

Omics Data visualisation Genomics Proteomics Metabolomics Transcriptomics Spatial omics multi-omics data integration transcriptomics
Recorded webinar

A guide to sequence analysis resources in Job Dispatcher
Course materials

Livestock genomics
Recorded webinar

Searching with the PDBe API
Recorded webinar

eQTL Catalogue: a compendium of uniformly processed human expression and splicing QTLs

GWAS study Genetic variation
Recorded webinar

Integrating publications into bioinformatics analysis

Natural language processing
Course materials

Proteomics bioinformatics 2024
Recorded webinar

Open access: Let's talk about open access, open data and open software

Data quality management
Recorded webinar

Getting gene and genome data programmatically: Ensembl REST API
Recorded webinar

How to make training FAIR
Recorded webinar

UniProtKB: Increasing our understanding of neurodegenerative disorders through data curation

Neurobiology Function analysis Data curation and archival
Recorded webinar

A guide to EBI Search
Recorded webinar

Getting started with the Open Targets Platform GraphQL API

Drug discovery
Course materials

Genome bioinformatics: resequencing and variant calling
Recorded webinar

Bringing it all together: human cohort standards, tools and applications
Recorded webinar

Poster winners, PerMedCoE Summer School 2023

Computational biology Personalised medicine
Recorded webinar

Data protection and security aspects of running simulations on personal data with HPC

Data security Personalised medicine Computer science
e-learning

Genome Properties: Tutorial

Functional annotation Protein signature models Phylogenetic profiling
Recorded webinar

Navigating patent data with SureChEMBL

Chemical biology
Recorded webinar

Domain-specific knowledge extraction from scientific texts using LLMs

Machine learning
Recorded webinar

The PerMedCoE competency framework to guide training and career development

Computational biology Personalised medicine
Recorded webinar

Using RNAcentral to explore and investigate non-coding RNA sequences

Functional, regulatory and non-coding RNA
Recorded webinar

Open with purpose: How and why to make your data open

Data management Data curation and archival
Recorded webinar

MGnify API: accessing microbiome data computationally

Microbial ecology
Recorded webinar

Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models

Computational biology Personalised medicine
Recorded webinar

Discover drug targets with Europe PMC Machine Learning Dataset and Open Targets
Recorded webinar

Navigating UniProt: a brief overview and recent updates
Recorded webinar

Studying metabolites and small molecules with MetaboLights and ChEBI

Metabolomics Small molecules Chemical biology

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PhenoMeNal: accessing metabolomics workflows in Galaxy

Data-driven plant sciences: A curated collection of EMBL-EBI on-demand training

Methods and resources for omics studies: A curated collection of EMBL-EBI on-demand training

A guide to sequence analysis resources in Job Dispatcher

Livestock genomics

Searching with the PDBe API

eQTL Catalogue: a compendium of uniformly processed human expression and splicing QTLs

Integrating publications into bioinformatics analysis

Proteomics bioinformatics 2024

Open access: Let's talk about open access, open data and open software

Getting gene and genome data programmatically: Ensembl REST API

How to make training FAIR

UniProtKB: Increasing our understanding of neurodegenerative disorders through data curation

A guide to EBI Search

Getting started with the Open Targets Platform GraphQL API

Genome bioinformatics: resequencing and variant calling

Bringing it all together: human cohort standards, tools and applications

Poster winners, PerMedCoE Summer School 2023

Data protection and security aspects of running simulations on personal data with HPC

Genome Properties: Tutorial

Navigating patent data with SureChEMBL

Domain-specific knowledge extraction from scientific texts using LLMs

The PerMedCoE competency framework to guide training and career development

Using RNAcentral to explore and investigate non-coding RNA sequences

Open with purpose: How and why to make your data open

MGnify API: accessing microbiome data computationally

Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models

Discover drug targets with Europe PMC Machine Learning Dataset and Open Targets

Navigating UniProt: a brief overview and recent updates

Studying metabolites and small molecules with MetaboLights and ChEBI

Deploying Nextflow pipelines in the cloud: a practical introduction

Methods for infectious disease modelling using genomics

Metagenomics bioinformatics at MGnify

Structural bioinformatics

Chemicals in a biological context: metabolites, drugs, and beyond

Genome bioinformatics: from short- to long-read sequencing

Managing a bioinformatics core facility

Single-cell RNA-seq analysis with Python

Introduction to RNA-seq and functional interpretation

Introduction to multi-omics data integration and visualisation

Microscopy data analysis: machine learning and the BioImage Archive

Data-driven approaches to understanding dementia

Introduction to metabolomics analysis

Systems biology: from large datasets to biological insight

From sequences to structures: Protein characterisation using EMBL-EBI APIs

Data science for life scientists

Proteomics bioinformatics

Bioinformatics for immunologists

Metagenomics bioinformatics at MGnify

Causality in biomedicine: going beyond associations

Structural bioinformatics

Genome bioinformatics: from short- to long-read sequencing