European Bioinformatics Institute (EBI)

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PhenoMeNal: accessing metabolomics workflows in Galaxy

• beginner
Metabolomics Chemical biology Galaxy
e-learning

The International Mouse Phenotyping Consortium: Finding phenotypes for your gene of interest

Genotype and phenotype Model organisms Gene function Mouse models IMPC Mammalian Phenotype Ontology Mouse knockouts CRISPR
e-learning

European Genome-phenome Archive: Quick tour

Genotype and phenotype EGA Biomedical data Phenotype Genetic data
e-learning

Open Targets informatics tools: Quick tour

Drug discovery Drug development
e-learning

AlphaFold: A practical guide

Structural biology Structure prediction Machine learning Artificial intelligence
Course materials

Small molecule chemistry: from proteins to pathways: EMBL-EBI resources in practice
Recorded webinar

InterProScan

Gene and protein families Function analysis
Recorded webinar

A guide to sequence analysis resources in Job Dispatcher
Recorded webinar

MGnify today: analysing microbiome data

Microbial ecology
Recorded webinar

BioStudies database: aggregating all outputs of a life sciences study

Literature and language Experimental design and studies
Recorded webinar

Introduction to exploring genome-phenome data with EGA

Genotype and phenotype
Recorded webinar

Practically FAIR

Translational medicine Data architecture, analysis and design
Recorded webinar

A guide to proteomics data analysis using UniProt and InterPro

Proteomics
Course materials

Proteomics bioinformatics 2024
Recorded webinar

A guide to analysing binding sites in protein structures

Protein structure analysis Proteins
Recorded webinar

MetaboLights: the home for metabolomics experiments and derived information

Metabolomics
e-learning

GOA and QuickGO: Quick tour

Gene ontology Gene ontology annotation Controlled vocabulary
Course materials

Introduction to multi-omics data integration and visualisation
Recorded webinar

Getting gene and genome data programmatically: Ensembl REST API
Recorded webinar

Multi-omics comparative pathway analysis with ReactomeGSA

Omics
Recorded webinar

Analysis of huge metabolic models with COBREXA.jl

Systems biology Simulation experiment Computer science
Recorded webinar

Introductory bioinformatics Q&A session: genes and gene expression

Bioinformatics
Course materials

Genome bioinformatics: resequencing and variant calling
Recorded webinar

Introductory bioinformatics Q&A session: proteins and structures

Bioinformatics
Recorded webinar

Bringing it all together: human cohort standards, tools and applications
Recorded webinar

Data protection and security aspects of running simulations on personal data with HPC

Data security Personalised medicine Computer science
Recorded webinar

Federated analysis for polygenic risk score calculations

Computational biology
Recorded webinar

Social Media in Science Communication
Recorded webinar

Non-invasive phenotyping to quantify the dynamics of plant-environment interaction

Plant biology
Recorded webinar

Discover drug targets with Europe PMC Machine Learning Dataset and Open Targets

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PhenoMeNal: accessing metabolomics workflows in Galaxy

The International Mouse Phenotyping Consortium: Finding phenotypes for your gene of interest

European Genome-phenome Archive: Quick tour

Open Targets informatics tools: Quick tour

AlphaFold: A practical guide

Small molecule chemistry: from proteins to pathways: EMBL-EBI resources in practice

InterProScan

A guide to sequence analysis resources in Job Dispatcher

MGnify today: analysing microbiome data

BioStudies database: aggregating all outputs of a life sciences study

Introduction to exploring genome-phenome data with EGA

Practically FAIR

A guide to proteomics data analysis using UniProt and InterPro

Proteomics bioinformatics 2024

A guide to analysing binding sites in protein structures

MetaboLights: the home for metabolomics experiments and derived information

GOA and QuickGO: Quick tour

Introduction to multi-omics data integration and visualisation

Getting gene and genome data programmatically: Ensembl REST API

Multi-omics comparative pathway analysis with ReactomeGSA

Analysis of huge metabolic models with COBREXA.jl

Introductory bioinformatics Q&A session: genes and gene expression

Genome bioinformatics: resequencing and variant calling

Introductory bioinformatics Q&A session: proteins and structures

Bringing it all together: human cohort standards, tools and applications

Data protection and security aspects of running simulations on personal data with HPC

Federated analysis for polygenic risk score calculations

Social Media in Science Communication

Non-invasive phenotyping to quantify the dynamics of plant-environment interaction

Discover drug targets with Europe PMC Machine Learning Dataset and Open Targets

Methods for infectious disease modelling using genomics

Introduction to pangenomes and why they are worth exploring

Concepts, methods, and resources in pangenomics

A guide to UniProt for students

Metagenomics bioinformatics at MGnify

Evolution of the accessory genome

Inferring bacterial pangenomes with gene-based approaches

Computational Biology Training in Hematology 2025, Module 2

Making sense of massive genomic data by indexing at scale

Structural bioinformatics

Pangenome graphs as a new paradigm in comparative genomics

Pangenome annotations and resources in Ensembl

Chemicals in a biological context: metabolites, drugs, and beyond

Genome bioinformatics: from short- to long-read sequencing

Managing a bioinformatics core facility

Single-cell RNA-seq analysis with Python

Introduction to RNA-seq and functional interpretation

Introduction to multi-omics data integration and visualisation

Microscopy data analysis: machine learning and the BioImage Archive

Data-driven approaches to understanding dementia

Introduction to metabolomics analysis

Systems biology: from large datasets to biological insight

From sequences to structures: Protein characterisation using EMBL-EBI APIs

Data science for life scientists

Proteomics bioinformatics

Bioinformatics for immunologists

Metagenomics bioinformatics at MGnify

Causality in biomedicine: going beyond associations

Structural bioinformatics

Genome bioinformatics: from short- to long-read sequencing