Swiss Institute of Bioinformatics

View home page

Materials (74)
Events (53)

Showing 30 materials out of 74

View all & filter

Video, Training materials, Mock data, E-learning

How to use Python and R with RDF Data

•• intermediate
Computer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data …
Video, Training materials, E-learning

Validate Graph Data with SHACL

•• intermediate
Medical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF …
Video, Training materials, E-learning

Training Primer (RDF and SPARQL)

• beginner
Ontology and terminology Medical informatics FAIR data Data management Computer science Data retrieval Data handling Database search Query and retrieval Clinical data …
Single-Cell Transcriptomics with R

•• intermediate
genes and genomes biochemistry biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics …
Interactive Visualization with Python

•• intermediate
data visualisation training torsten schwede & thierry sengstag group
Video, Training materials, E-learning

Semantic Standards

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR …
Video, Training materials, E-learning

Expanding the SPHN RDF Schema

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Data handling Visualisation Ontology visualisation Data editing Clinical data …
Enrichment Analysis

•• intermediate
biostatistics,experimental biology,functional genomics,genes and genomes,training biostatistics,experimental biology,functional genomics,genes and genomes,training,mauro delorenzi & frédéric schütz group biostatistics,experimental biology,functional genomics,genes and genomes,training,raphael gottardo group
Video, Training materials, Mock data, E-learning

RDF Schema and Data Visualization

• beginner
Computer science Data management FAIR data Medical informatics Data visualisation Query and retrieval Data handling Data retrieval Visualisation Ontology visualisation …
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Vital-IT Infrastructure Usage
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
Cancer Variant Analysis

•• intermediate
First Steps with R in Life Sciences

• beginner
training,biostatistics,data visualisation,programming,mark ibberson group training,biostatistics,data visualisation,programming,torsten schwede & thierry sengstag group
Long-read Sequence Analysis

• beginner
training genes and genomes next generation sequencing environmental science medicine and health rémy bruggmann group
First Steps with Python in Life Sciences

• beginner
data management data visualisation programming reproducibility training torsten schwede & thierry sengstag group mark ibberson group
Multiomics Data Analysis and Integration

• beginner
data integration multiomics data analysis
Introduction to Bayesian Statistics with R

•• intermediate
biostatistics training
Introduction to Machine Learning with Python

• beginner
data mining,machine learning,training,mark ibberson group,torsten schwede & thierry sengstag group data mining,machine learning,training,torsten schwede & thierry sengstag group,mark ibberson group
Docker and Singularity for Reproducible Research: Getting Started with Containers

• beginner
reproducibility container data management data security high-performance computing
Submitting, Finding and Downloading Raw Sequencing Data with ENA

• beginner
FAIR data Metadata Data submission
Best Practices in Programming

•• intermediate
programming reproducibility bernd rinn group
UNIX Shell Scripting in Life Sciences

•• intermediate
programming training mark ibberson group
Diving into deep learning - theory and applications with PyTorch

•• intermediate
When immunology meets bioinformatics

• beginner
Version Control with Git

• beginner
programming,reproducibility,data management programming,reproducibility,data management,training
NGS - Genome Variant Analysis

• beginner
medicine and health,next generation sequencing,training,agriculture,environmental science,medicine and health medicine and health,next generation sequencing,training,agriculture,environmental science,rémy bruggmann group,medicine and health
ISMARA and CREMA: automatically inferring gene regulatory networks from gene expression, chromatin accessibility or epigenome data

• beginner
Enzymes: Extracting Biological Insight Using UniProt

• beginner
Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

• beginner
functional genomics genes and genomes next generation sequencing transcriptomics training

Showing 30 events out of 53 (also found 446 past events)

View all events & filter

Activity log

Content provider

Type

ELIXIR node

Owner

Editors

How to use Python and R with RDF Data

Validate Graph Data with SHACL

Training Primer (RDF and SPARQL)

Single-Cell Transcriptomics with R

Interactive Visualization with Python

Semantic Standards

Expanding the SPHN RDF Schema

Enrichment Analysis

RDF Schema and Data Visualization

How to use V-pipe (SARS-CoV-2 data)

Vital-IT Infrastructure Usage

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

Cancer Variant Analysis

First Steps with R in Life Sciences

Long-read Sequence Analysis

First Steps with Python in Life Sciences

Multiomics Data Analysis and Integration

Introduction to Bayesian Statistics with R

Introduction to Machine Learning with Python

Docker and Singularity for Reproducible Research: Getting Started with Containers

Submitting, Finding and Downloading Raw Sequencing Data with ENA

Best Practices in Programming

UNIX Shell Scripting in Life Sciences

Diving into deep learning - theory and applications with PyTorch

When immunology meets bioinformatics

Version Control with Git

NGS - Genome Variant Analysis

ISMARA and CREMA: automatically inferring gene regulatory networks from gene expression, chromatin accessibility or epigenome data

Enzymes: Extracting Biological Insight Using UniProt

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Spatial Omics Data Analysis

Introduction to Statistics with R

First Steps with R in Life Sciences

Introduction to GPU Programming for Life Sciences

Introduction to High-performance Computing (sciCORE Cluster)

Long-read Sequence Analysis

Multiomics Data Analysis and Integration

First Steps with Python in Life Sciences

Enrichment Analysis

Single-Cell Transcriptomics with R

ViralZone and the Revolution in 3D Virus Structure

Statistics and Machine Learning for Life Sciences

Best Practices in High-Perfomance Computing (sciCORE cluster)

First Steps with SQL for Data Science

NGS - Quality Control, Alignment, Visualisation

Introduction to High-performance Computing (sciCORE Cluster)

Introduction to Bayesian Statistics with R

Introduction to Metagenomics Data Analysis of Microbial Communities

Gene Expression made Useful Easily: Tools and Database of Bgee

Using Large Language Models for Biodata Exploration: From Theory to Practice

First Steps in Parallelization with OpenMP

Introduction to Machine Learning with Python

Docker and Singularity for Reproducible Research: Getting Started with Containers

Reproducible and Scalable Research with Snakemake and Software Containers

UniProt: Focus on Plant Proteins

Submitting, Finding and Downloading Raw Sequencing Data with ENA

Best Practices in Programming

Single-Cell Transcriptomics with R

Make your research FAIRer with Quarto, GitHub and Zenodo

Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions