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Video, Training materials, Mock data, E-learning

How to use Python and R with RDF Data

•• intermediate
Computer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data …
Video, Training materials, E-learning

Validate Graph Data with SHACL

•• intermediate
Medical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF …
Diving into deep learning - theory and applications with PyTorch

•• intermediate
Video, Training materials, E-learning

Training Primer (RDF and SPARQL)

• beginner
Ontology and terminology Medical informatics FAIR data Data management Computer science Data retrieval Data handling Database search Query and retrieval Clinical data …
Introduction to Metagenomics Data Analysis of Microbial Communities

• beginner
Biology-informed Multiomics Data Integration and Visualization

• beginner
Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

• beginner
functional genomics genes and genomes next generation sequencing transcriptomics training
ViralZone and the Revolution in 3D Virus Structure

• beginner
infectious disease medicine and health services and resources training alan bridge group
When immunology meets bioinformatics

• beginner
Introduction to Machine Learning with Python

• beginner
data mining,machine learning,training,mark ibberson group,torsten schwede & thierry sengstag group data mining,machine learning,training,torsten schwede & thierry sengstag group,mark ibberson group
First Steps with SQL for Data Science

• beginner
SQL programming
Version Control with Git

• beginner
programming,reproducibility,data management programming,reproducibility,data management,training
Video, Training materials, E-learning

Semantic Standards

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR …
Video, Training materials, E-learning

Expanding the SPHN RDF Schema

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Data handling Visualisation Ontology visualisation Data editing Clinical data …
Galaxy Introduction for Life Scientists

• beginner
basic research experimental biology interoperability next generation sequencing reproducibility training michael stadler group
Gene Expression made Useful Easily: Tools and Database of Bgee

• beginner
Bgee genes and genomes evolution and phylogeny services and resources comparative genomics database curation data management data visualisation transcriptomics training …
Advanced Statistics: Statistical Modelling

••• advanced
Make your research FAIRer with Quarto, GitHub and Zenodo

• beginner
FAIR data management reproducible research
Single-Cell Transcriptomics with R

•• intermediate
genes and genomes biochemistry biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics …
Video, Training materials, Mock data, E-learning

RDF Schema and Data Visualization

• beginner
Computer science Data management FAIR data Medical informatics Data visualisation Query and retrieval Data handling Data retrieval Visualisation Ontology visualisation …
Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions

• beginner
biodiversity non model organisms evolution and phylogeny genes and genomes comparative genomics evolutionary biology training marc robinson-rechavi group robert waterhouse group christophe dessimoz group
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Vital-IT Infrastructure Usage
Course design: Considerations for trainers – a Professional Guide

Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
First Steps with UNIX in Life Sciences

• beginner
programming,training programming,training,mark ibberson group
IFB Shiny training

•• intermediate
R-programming Reproducible Science
Submitting, Finding and Downloading Raw Sequencing Data with ENA

• beginner
FAIR data Metadata Data submission
NGS - Quality Control, Alignment, Visualisation

• beginner
training genes and genomes next generation sequencing environmental science medicine and health
Using ASAP for Single-Cell Analysis

• beginner
genes and genomes biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics bart deplancke group

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Swiss Institute of Bioinformatics

The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international...

83 training materials

30 events (491 past events)

Swiss Institute of Bioinformatics http://edu.isb-sib.ch/ https://dev.tess.elixir-europe.org/content_providers/swiss-institute-of-bioinformatics The SIB Swiss Institute of Bioinformatics is an academic, non-profit foundation recognised of public utility and established in 1998. SIB coordinates research and education in bioinformatics throughout Switzerland and provides high quality bioinformatics services to the national and international research community. /system/content_providers/images/000/000/011/original/sib.png?1469458452

Activity log

ELIXIR node

Country

Status

Training coordinator

How to use Python and R with RDF Data

Validate Graph Data with SHACL

Diving into deep learning - theory and applications with PyTorch

Training Primer (RDF and SPARQL)

Introduction to Metagenomics Data Analysis of Microbial Communities

Biology-informed Multiomics Data Integration and Visualization

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

ViralZone and the Revolution in 3D Virus Structure

When immunology meets bioinformatics

Introduction to Machine Learning with Python

First Steps with SQL for Data Science

Version Control with Git

Semantic Standards

Expanding the SPHN RDF Schema

Galaxy Introduction for Life Scientists

Gene Expression made Useful Easily: Tools and Database of Bgee

Advanced Statistics: Statistical Modelling

Make your research FAIRer with Quarto, GitHub and Zenodo

Single-Cell Transcriptomics with R

RDF Schema and Data Visualization

Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions

How to use V-pipe (SARS-CoV-2 data)

Vital-IT Infrastructure Usage

Course design: Considerations for trainers – a Professional Guide

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

First Steps with UNIX in Life Sciences

IFB Shiny training

Submitting, Finding and Downloading Raw Sequencing Data with ENA

NGS - Quality Control, Alignment, Visualisation

Using ASAP for Single-Cell Analysis

First Steps with R in Life Sciences

First Steps with Python in Life Sciences

Enrichment Analysis

NGS - Quality Control, Alignment, Visualisation

Introduction to Machine Learning with Python

Reproducible Research and Data Analysis using Nextflow Pipelines

Version Control with Git

UNIX Shell Scripting in Life Sciences

Data Analysis and Representation in Python

Ensuring More Accurate, Generalisable, and Interpretable Machine Learning Models for Bioinformatics

Interactive Visualization with Python

Federated Learning in Bioinformatics

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Best Practices for Investigating Gene Expression Differences by Biological Sex

Diving into deep learning - theory and applications with PyTorch

Docker and Singularity for Reproducible Research: Getting Started with Containers

Introduction to High-performance Computing (sciCORE Cluster)

Introduction to High-performance Computing (sciCORE Cluster)

Single-Cell Transcriptomics with R

Optimizing Python Code for Better Performance

When immunology meets bioinformatics

Introduction to Sequencing Data Analysis

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Introduction to NGS ATAC-seq data analysis

First Steps with Python in Life Sciences

ELIXIR-GOBLET Train-the-Trainer

Using Large Language Models for Biodata Exploration: From Theory to Practice

Introduction to NGS ATAC-seq data analysis

Cancer Variant Analysis

Swiss Institute of Bioinformatics