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Keyword
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Scientific topic
- Genome annotation
- Bioinformatics1156
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Operation
- Data handling2
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- Functional genome annotation2
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- Allele calling1
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- Germ line variant calling1
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- Sequence assembly (genome assembly)1
- Somatic variant calling1
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- de novo mutation detection1
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Venue
- Cold Spring Harbor Laboratory24
- European Molecular Biology Laboratory16
- European Bioinformatics Institute, Hinxton10
- EMBL Heidelberg8
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- The King's Buildings, The University of Edinburgh4
- Holiday Inn Munich – City Centre3
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- LANGEBIO, Cinvestav, Libramiento Norte Carretera Leon Km 9.62
- The Revere Hotel2
- University of Ljubljana, Faculty of Medicine2
- Hobart Convention and Exhibition Centre1
- 500 Hotel Circle North1
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- Birmingham Metabolomics Training Centre1
- BluePoint Antwerpen, 9, Filip Williotstraat1
- Cirad, 389, Avenue Agropolis1
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- Faculty of Sciences, University of Porto, Rua do Campo Alegre 1021/10551
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- Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia1
- Sheraton Frankfurt Airport Hotel1
- St Lucia1
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- Technická 1903/3, 3, Technická1
- The Sands Expo and Convention Center1
- The workshop will take place at the Institute of Plant Molecular Biology building at the Academy of Sciences and University campus in České Budějovice, Branisovska 31, Czech Republic (http://goo.gl/maps/G74MI).1
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- University of Costa Rica (UCR), Ciudad universitaria Rodrigo Facio Brenes1
- University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia1
- University of Maryland1
- University of Milano-Bicocca, Building U7, Lab 7151
- University of Tennessee,1
- Università di Pavia, via Ferrata 11
- Via Pietro Castellino, 1111
- Wageningen University1
- World Trade Center1
- https://singlecell-pilsen2022.zcu.cz/location.html1
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City
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Country
- United States of America98
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Organizer
- European Bioinformatics Institute (EBI)29
- Cold Spring Harbor Laboratory26
- Cambridge Healthtech Institute20
- EMBL20
- EMBL Heidelberg16
- EMBO12
- Australian BioCommons9
- University of Cambridge8
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- EMBL-EBI3
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- OMICS Group3
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- VLSCI - University of Melbourne3
- diXa3
- BioExcel2
- Critical Assessment of Genome Interpretation2
- GMOD2
- Global Engage Ltd2
- Hanson Wade2
- NIMBioS2
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology2
- Select Bio2
- The New York Academy of Sciences2
- VIB Conferences2
- Biology Centre CAS1
- Charles University, University of West Bohemia, Medical University of Vienna, London South Bank University, University of Milan, University of Warsaw, Heidelberg University and University of Copenhagen 1
- ARDC1
- AllBio1
- Andrea Cabibbe (https://training.galaxyproject.org/training-material/hall-of-fame/andreacabibbe/), Andrea Spitaleri (https://training.galaxyproject.org/training-material/hall-of-fame/andrea-spitaleri/), Arash Ghodousi (https://training.galaxyproject.org/training-material/hall-of-fame/arashghodousi/), Christoph Stritt (https://training.galaxyproject.org/training-material/hall-of-fame/cstritt/), Daniela Brites (https://training.galaxyproject.org/training-material/hall-of-fame/dbrites/), Galo A. Goig (https://training.galaxyproject.org/training-material/hall-of-fame/GaloGS/), Liliana Rutaihwa (https://training.galaxyproject.org/training-material/hall-of-fame/lilianarutaihwa/), Peter van Heusden (https://training.galaxyproject.org/training-material/hall-of-fame/pvanheus/)1
- Arctic University of Norway, ELIXIR Norway, ELIXIR Slovenia1
- Australasian Genomic Technologies Association1
- CBW1
- CHI1
- CRS41
- Cell Press1
- Chiara Batini (University of Leicester, UK), Vincenza Colonna (CNR, Napoli, IT) and Allegra Via (CNR-IBPM, IT)1
- Cold Spring Harbor Asia1
- Daniela Brites (https://training.galaxyproject.org/training-material/hall-of-fame/dbrites/)1
- Doherty Institute for Infection & Immunity1
- EADGENE1
- ELIXIR CZ, IOCB Prague1
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- ELIXIR-BE, ELIXIR-FR, ELIXIR-NO, ELIXIR-PT, ELIXIR-SE, ELIXIR-SI1
- ELIXIR-NO, ELIXIR-SE (NBIS), ELIXIR-SI, ELIXIR-FR (INRAE)1
- EMBI1
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- Elixir CZ, UCT Prague, Data Carpentry1
- European Genetics Foundation1
- European Society for Molecular Imaging1
- Fudan University & The Association of Asian Societies for Bioinformatics1
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- Galaxy Community and ELIXIR1
- H3ABioNet1
- HUGO1
- Hobart Convention and Exhibition Centre1
- Human Genome Organisation and International Genetics Federation1
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- IOCB Prague, University of Ljubljana, Faculty of Medicine, ELIXIR-FI1
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- ISMB/ECCB Satellite Meeting1
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- Institute of biology of Komi Science Center of Ural division of RAS1
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- LCSB/SBI1
- Library Publishing Media1
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- Mansoura University1
- Mathematical Biosciences Institute1
- Mayo Civic1
- National Cancer Institute and the Office of Cancer Clinical Proteomics Research1
- National Institute for Mathematical and Biological Synthesis1
- Novo Nordisk Foundation1
- OIST1
- OMICS Group Inc1
- PSB1
- Pedro Fernandes1
- RIKEN Center for Developmental Biology1
- Reed Exhibitions Japan Ltd1
- Rita Castilho, Center for Marine Sciences1
- SELECTBIO1
- SIB/CUSO1
- Selecbio1
- Societat Catalana de Biologia, Bioinformatics Barcelona Association, INB/ELIXIR-ES1
- Telos Philosophische Praxis1
- The Institute of Biomedical Science1
- The Institute of Cytology and Genetics1
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Sponsor
- ELIXIR Europe3
- ABRomics2
- ELIXIR EXCELERATE2
- Institut Français de Bioinformatique2
- Alvéole1
- Analisis1
- BD1
- Bioké1
- Hamamatsu1
- JSR Life Sciences1
- Leica1
- Lonza1
- Molecular devices1
- Pall Life Sciences1
- Thermofisher Scientific1
- VyCap1
- Westbuirg1
- Zeiss1
- Analis1
- Avans Hogeschool1
- BGI1
- Bio-techne1
- Bioke1
- Biorad1
- ELIXIR Training Platform1
- Elixir Italy1
- Euromarine1
- European Union1
- H3ABioNet1
- INRA1
- INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN1
- IRCCS Ospedale San Raffaele1
- LINQ management GmbH1
- Lexogen1
- Merck1
- NBIS - National Bioinformatics Infrastructure Sweden1
- NORBIS1
- National Research Council of Italy1
- Oeiras Valley1
- Pan-Africa network for genomic surveillance of poverty related diseases and emerging pathogens1
- Pan-African Consortium for the Evaluation of Antituberculosis Antibiotics1
- South African National Bioinformatics Institute, University of the Western Cape1
- Swiss Tropical and Public Health Institute1
- The European & Developing Countries Clinical Trials Partnership1
- The European Union1
- The Foundation for Innovative New Diagnostics1
- Università Vita-Salute San Raffaele1
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Target audience
- Researchers13
- PhD students10
- Graduate students8
- Institutions and other external Institutions or individuals7
- Postdocs and Staff members from the University of Cambridge7
- life scientists7
- Plant research4
- bioinformaticians3
- Life Science Researchers2
- Master students2
- The course is aimed primarily at mid-career scientists – especially those whose formal education likely included statistics2
- but who have not perhaps put this into practice since.2
- Anyone intersted in GWAS and using the H3Africa genotyping chip1
- Bioinformaticians and wet-lab biologists who can program in Perl.1
- Biologists1
- Biologists and bioinformaticians. The course will be of particular interest to researchers investigating organisms without a reference genome or populations featuring high levels of genetic diversity.1
- Biologists, Genomicists, Computer Scientists1
- Biotechnology Companies1
- Business Entrepreneurs1
- Clinicians1
- Cloud users1
- Companies 1
- Computational biologists1
- Developers1
- Galaxy users1
- HPC users1
- Pharmaceutical Industry1
- Post Docs1
- Postdoctoral Researchers1
- Postgraduate students1
- The handson component is aimed at novice to intermediate users who are seeking detailed guidance with GATK and related tools.1
- The lecture based component of the workshop is aimed at a mixed audience of people who are new to the topic of variant discovery or to GATK1
- This course is suitable for all users who have an interest in Clinical Genetics with a special emphasis on rare disorders. It is also pertinent to those who seek to develop a better understanding of the role of accurate phenotyping in aiding the interpretation of filtered variants in patients and understanding genotype-phenotype correlations.1
- beginner bioinformaticians1
- evolutionary biologists who already have bioinformatics skills. PhD students and Post-Doc researchers will benefit the most out of this course, but applications from all candidates will be evaluated in their context1
- or who are already GATK users seeking to improve their understanding of and proficiency with the tools.1
- post-docs1
- seeking an introductory course into the tools1
- software developers, bioinformaticians1
- software engineers1
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