e-learning

Annotate, prepare tests and publish Galaxy workflows in workflow registries

Abstract

Research data is accumulating at an unprecedented rate, presenting significant challenges for achieving fully reproducible science. As a result, implementing high-quality management of scientific data has become a global priority. One key aspect of this effort is the use of computational workflows, which describe the complex, multi-step methods used for data analysis. In Galaxy, workflows are a powerful feature that allows researchers to link multiple steps of complex analyses seamlessly. To maximize their impact, these workflows should adhere to best practices that make them FAIR: Findable, Accessible, Interoperable, and Reusable.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How can a Galaxy workflow be annotated to improve reusability?
  • What are the best practices for testing a Galaxy workflow?
  • How can a Galaxy workflow be submitted to the Intergalactic Workflow Commission (IWC)?

Learning Objectives

  • Annotate a Galaxy workflows with essential metadata
  • Annotate and apply best practices to data analysis Galaxy workflows for consistency and reusability
  • Implement robust tests to ensure workflow reliability and accuracy
  • Successfully integrate key data analysis Galaxy workflows into IWC, improving accessibility and usability

Licence: Creative Commons Attribution 4.0 International

Keywords: FAIR, Using Galaxy and Managing your Data, workflows

Target audience: Students

Resource type: e-learning

Version: 1

Status: Active

Prerequisites:

  • Creating, Editing and Importing Galaxy Workflows
  • Galaxy Basics for genomics

Learning objectives:

  • Annotate a Galaxy workflows with essential metadata
  • Annotate and apply best practices to data analysis Galaxy workflows for consistency and reusability
  • Implement robust tests to ensure workflow reliability and accuracy
  • Successfully integrate key data analysis Galaxy workflows into IWC, improving accessibility and usability

Date modified: 2025-05-26

Date published: 2025-05-26

Authors: Bérénice Batut, Clea Siguret, Nadia Goué

Contributors: Björn Grüning, Bérénice Batut, Clea Siguret

External resources:

Activity log