Galaxy Training

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Showing 30 materials out of 680

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slides

Docker and Galaxy

• beginner
Galaxy Server administration
slides

Circos

• beginner
Visualisation
e-learning

Running the GTN website online using GitPod

• beginner
Contributing to the Galaxy Training Material
Introduction to Galaxy Analyses
e-learning

Teaching Python

• beginner
Contributing to the Galaxy Training Material
e-learning

Creating Interactive Galaxy Tours

• beginner
Contributing to the Galaxy Training Material
e-learning

An Introduction to Genome Assembly

• beginner
Sequence assembly Assembly
slides

Automated Cell Annotation

• beginner
Single Cell
e-learning

Removal of human reads from SARS-CoV-2 sequencing data

•• intermediate
Sequence analysis covid19
slides

BioImage Model Zoo: Advanced models in one-click

• beginner
Imaging Image analysis using Deep Learning bioimageio image analysis
slides

Phylogenetics - Back to Basics - Introduction

• beginner
Evolutionary biology Evolution
e-learning

Reference Data with CVMFS

• beginner
Galaxy Server administration ansible git-gat
e-learning

Galaxy Installation with Ansible

• beginner
Database management Informatics Data management Galaxy Server administration ansible deploying git-gat
slides

Genome assembly quality control.

• beginner
Sequence assembly Assembly
e-learning

Proteogenomics 1: Database Creation

•• intermediate
Proteomics proteogenomics
e-learning

Genomic Data Visualisation with JBrowse

•• intermediate
Visualisation gmod jbrowse1
e-learning

Deep Learning (Part 3) - Convolutional neural networks (CNN)

• beginner
Statistics and probability Statistics and machine learning
e-learning

Creating content in Markdown

• beginner
Contributing to the Galaxy Training Material
slides

Introduction to metatranscriptomics

• beginner
Metagenomics Microbial ecology Microbiome
e-learning

Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

• beginner
Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
slides

Galaxy Interactive Environments

• beginner
Software engineering Development in Galaxy
e-learning

Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data

• beginner
Metagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome
slides

Tool Dependencies and Containers

• beginner
Software engineering Development in Galaxy
e-learning

Evaluating and ranking a set of pathways based on multiple metrics

• beginner
Synthetic biology Synthetic Biology
e-learning

FAIR data management solutions

• beginner
FAIR Data, Workflows, and Research data stewardship dmp fair
e-learning

Image classification in Galaxy with fruit 360 dataset

• beginner
Statistics and probability Statistics and machine learning
e-learning

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

• beginner
10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook
e-learning

Clustering 3K PBMCs with Seurat

• beginner
10x Single Cell
slides

Workshop Kickoff

• beginner
Teaching and Hosting Galaxy training
slides

Recurrent neural networks (RNN) Deep Learning - Part 2

• beginner
Statistics and probability Statistics and machine learning

Showing 28 events (also found 17 past events)

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Docker and Galaxy

Circos

Running the GTN website online using GitPod

Introduction to Galaxy Analyses

Teaching Python

Creating Interactive Galaxy Tours

An Introduction to Genome Assembly

Automated Cell Annotation

Removal of human reads from SARS-CoV-2 sequencing data

BioImage Model Zoo: Advanced models in one-click

Phylogenetics - Back to Basics - Introduction

Reference Data with CVMFS

Galaxy Installation with Ansible

Genome assembly quality control.

Proteogenomics 1: Database Creation

Genomic Data Visualisation with JBrowse

Deep Learning (Part 3) - Convolutional neural networks (CNN)

Creating content in Markdown

Introduction to metatranscriptomics

Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

Galaxy Interactive Environments

Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data

Tool Dependencies and Containers

Evaluating and ranking a set of pathways based on multiple metrics

FAIR data management solutions

Image classification in Galaxy with fruit 360 dataset

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

Clustering 3K PBMCs with Seurat

Workshop Kickoff

Recurrent neural networks (RNN) Deep Learning - Part 2

Workshop on high-throughput sequencing data analysis with Galaxy

Galaxy Training Academy 2025

Learning Pathway Tool development for a nice & shiny subdomain

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

Learning Pathway Introduction to Galaxy and Ecological data analysis

Learning Pathway Proteogenomics

Learning Pathway Introductory SQL

Learning Pathway Introduction to Galaxy and Sequence analysis

Learning Pathway Genome annotation for prokaryotes

Learning Pathway Detection of AMR genes in bacterial genomes

Learning Pathway Train the Trainers

Learning Pathway Building training material in Galaxy

Learning Pathway Clinical metaproteomics workflows within Galaxy

Learning Pathway Applying single-cell RNA-seq analysis

Learning Pathway Admin Training Course

Learning Pathway Gallantries Grant - Intellectual Output 1 - Introduction to data analysis and -management, statistics, and coding

Learning Pathway Gallantries Grant - Intellectual Output 2 - Large-scale data analysis, and introduction to visualisation and data modelling

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

Learning Pathway Introductory Python

Learning Pathway Gallantries Grant - Intellectual Output 5 - Train-the-Trainer and mentoring programme

Learning Pathway Genome annotation for eukaryotes

Learning Pathway Discovering Galaxy through climate analysis

Learning Pathway FAIR Data Management

Learning Pathway From R to Machine Learning; an introductory course

Learning Pathway Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Learning Pathway Introduction to Data Driven Life Sciences

Learning Pathway Gallantries Grant - Intellectual Output 3 - Data stewardship, federation, standardisation, and collaboration

Learning Pathway Metagenomics data processing and analysis for microbiome