Galaxy Training

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Events (34)

Showing 30 materials out of 733

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e-learning

Decontamination of a genome assembly

• beginner
Sequence assembly Genomics Biodiversity Assembly biodiversity
e-learning

Assembly of metagenomic sequencing data

• beginner
Sequence assembly Metagenomics Assembly assembly metagenomics microgalaxy
e-learning

FAIR-by-Design methodology

• beginner
Contributing to the Galaxy Training Material FAIR Learning Objects FAIR-by-Design Learning Materials FAIR-by-Design Methodology work-in-progress
e-learning

GTN Metadata

• beginner
Contributing to the Galaxy Training Material
e-learning

Making sense of a newly assembled genome

• beginner
Sequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
e-learning

Single-cell quality control with scater

• beginner
Single Cell work-in-progress
e-learning

Assembly of the mitochondrial genome from PacBio HiFi reads

• beginner
Sequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity
e-learning

Analysis of plant scRNA-Seq Data with Scanpy

• beginner
Single Cell paper-replication plants
e-learning

Removal of human reads from SARS-CoV-2 sequencing data

•• intermediate
Sequence analysis covid19
slides

Phylogenetics - Back to Basics - Estimating trees from alignments

• beginner
Evolutionary biology Evolution
e-learning

Generating a single cell matrix using Alevin and combining datasets (bash + R)

• beginner
10x MIGHTS Single Cell jupyter-notebook paper-replication
slides

Phylogenetics - Back to Basics - Phylogenetic Networks

• beginner
Evolutionary biology Evolution
slides

Identification of non-canonical ORFs and their potential biological function

• beginner
Transcriptomics
e-learning

One protein along the UniProt page

• beginner
Software engineering Foundations of Data Science
e-learning

Text-Mining Differences in Chinese Newspaper Articles

• beginner
Statistics and probability Digital Humanities text mining
slides

An earth-system RO-Crate

• beginner
FAIR Data, Workflows, and Research earth-system marine omics ocean ro-crate
e-learning

Infinium Human Methylation BeadChip

• beginner
Epigenomics Epigenetics
e-learning

Getting started with Onedata distributed storage
e-learning

Designing plasmids encoding predicted pathways by using the BASIC assembly method

• beginner
Synthetic biology Synthetic Biology
e-learning

Asynchronous training

• beginner
Teaching and Hosting Galaxy training
e-learning

Training Infrastructure as a Service

• beginner
Teaching and Hosting Galaxy training cyoa
e-learning

Adding and updating best practice metadata for Galaxy tools using the bio.tools registry

• beginner
Software engineering Development in Galaxy
slides

Galaxy Administrator Time Burden and Technology Usage

• beginner
Galaxy Server administration deploying maintenance survey
slides

Phylogenetics - Back to Basics - Building Trees

• beginner
Evolutionary biology Evolution
slides

Foundational Aspects of Machine Learning

• beginner
Statistics and probability Statistics and machine learning ai-ml elixir
e-learning

Running molecular dynamics simulations using GROMACS

•• intermediate
Computational chemistry
slides

Galaxy and Celery

• beginner
Galaxy Server administration
slides

Trajectory analysis

• beginner
Single Cell
e-learning

Python - Warm-up for statistics and machine learning
slides

Options for using Galaxy

• beginner
Introduction to Galaxy Analyses

Showing 30 events out of 34 (also found 21 past events)

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Type

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Decontamination of a genome assembly

Assembly of metagenomic sequencing data

FAIR-by-Design methodology

GTN Metadata

Making sense of a newly assembled genome

Single-cell quality control with scater

Assembly of the mitochondrial genome from PacBio HiFi reads

Analysis of plant scRNA-Seq Data with Scanpy

Removal of human reads from SARS-CoV-2 sequencing data

Phylogenetics - Back to Basics - Estimating trees from alignments

Generating a single cell matrix using Alevin and combining datasets (bash + R)

Phylogenetics - Back to Basics - Phylogenetic Networks

Identification of non-canonical ORFs and their potential biological function

One protein along the UniProt page

Text-Mining Differences in Chinese Newspaper Articles

An earth-system RO-Crate

Infinium Human Methylation BeadChip

Getting started with Onedata distributed storage

Designing plasmids encoding predicted pathways by using the BASIC assembly method

Asynchronous training

Training Infrastructure as a Service

Adding and updating best practice metadata for Galaxy tools using the bio.tools registry

Galaxy Administrator Time Burden and Technology Usage

Phylogenetics - Back to Basics - Building Trees

Foundational Aspects of Machine Learning

Running molecular dynamics simulations using GROMACS

Galaxy and Celery

Trajectory analysis

Python - Warm-up for statistics and machine learning

Options for using Galaxy

Learning Pathway Introduction to Data Driven Life Sciences

Learning Pathway Metagenomics data processing and analysis for microbiome

Learning Pathway Tool development for a nice & shiny subdomain

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

Learning Pathway Introductory SQL

Learning Pathway Train the Trainers

Learning Pathway Introduction to Galaxy and Ecological data analysis

Learning Pathway Proteogenomics

Learning Pathway Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq data

Learning Pathway Applying single-cell RNA-seq analysis

Learning Pathway Artificial Intelligence and Machine Learning in Life Sciences using Python

Learning Pathway Bacterial comparative genomics

Learning Pathway Building training material in Galaxy

Learning Pathway Introduction to Galaxy and Sequence analysis

Learning Pathway Machine learning

Learning Pathway Epigenetics data analysis with Galaxy

Learning Pathway Clinical metaproteomics workflows within Galaxy

Learning Pathway Gallantries Grant - Intellectual Output 3 - Data stewardship, federation, standardisation, and collaboration

Learning Pathway Admin Training Course

Learning Pathway Neoantigen discovery using the iPepGen pipeline

Learning Pathway Gallantries Grant - Intellectual Output 1 - Introduction to data analysis and -management, statistics, and coding

Learning Pathway Gallantries Grant - Intellectual Output 2 - Large-scale data analysis, and introduction to visualisation and data modelling

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

Learning Pathway Introductory Python

Learning Pathway Detection of AMR genes in bacterial genomes

Learning Pathway Genome annotation for prokaryotes

Learning Pathway Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Learning Pathway Gallantries Grant - Intellectual Output 5 - Train-the-Trainer and mentoring programme

Learning Pathway Genome annotation for eukaryotes

Learning Pathway Discovering Galaxy through climate analysis