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e-learning
Quality Control
• beginnerSequence analysis -
e-learning
Mapping
• beginnerSequence analysis Mapping -
slides
Welcome to the BioImage Model Zoo
• beginnerImaging Image analysis using Deep Learning bioimageio image analysis -
e-learning
FAIR Bioimage Metadata
• beginnerImaging bioimaging data management fair -
e-learning
Neural networks using Python
•• intermediateStatistics and probability Statistics and machine learning ai-ml elixir jupyter-notebook work-in-progress -
slides
Introduction to Transcriptomics
• beginnerTranscriptomics -
slides
Visualisations in Galaxy
• beginnerVisualisation -
slides
Introduction to DNA Methylation data analysis
• beginnerEpigenomics Epigenetics -
slides
Phylogenetics - Back to Basics - Estimating trees from alignments
• beginnerEvolutionary biology Evolution -
e-learning
Deep Learning (Part 2) - Recurrent neural networks (RNN)
• beginnerStatistics and probability Statistics and machine learning -
slides
Introduction to proteomics, protein identification, quantification and statistical modelling
• beginnerProteomics -
slides
An earth-system RO-Crate
• beginnerFAIR Data, Workflows, and Research earth-system marine omics ocean ro-crate -
e-learning
Connecting Galaxy to a compute cluster
• beginnerGalaxy Server administration ansible git-gat jobs -
slides
Galaxy Administrator Time Burden and Technology Usage
• beginnerGalaxy Server administration deploying maintenance survey -
e-learning
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
• beginnerSequence analysis plants -
e-learning
De novo transcriptome reconstruction with RNA-Seq
• beginnerTranscriptomics -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
e-learning
Visualization of RNA-Seq results with Volcano Plot in R
•• intermediateTranscriptomics interactive-tools -
e-learning
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Galaxy Basics for everyone
• beginnerIntroduction to Galaxy Analyses -
e-learning
Genome Annotation
• beginnerGenomics Genome Annotation prokaryote work-in-progress -
e-learning
Genome annotation with Helixer
•• intermediateGenomics Biodiversity Zoology Plant biology Genome Annotation biodiversity eukaryota helixer jbrowse1 -
e-learning
Library Generation for DIA Analysis
•• intermediateProteomics DIA -
e-learning
Ansible
• beginnerGalaxy Server administration ansible -
e-learning
FAIR and its Origins
• beginnerFAIR Data, Workflows, and Research data stewardship dmp fair -
slides
High Performance Computing for Pairwise Genome Comparison
• beginnerGenomics Genome Annotation -
e-learning
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
e-learning
Workflow Run RO-Crate Introduction
• beginnerFAIR Data, Workflows, and Research ro-crate -
e-learning
Exporting Workflow Run RO-Crates from Galaxy
• beginnerFAIR Data, Workflows, and Research ro-crate workflows -
slides
Introduction to ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics
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