e-learning
Visualization of RNA-Seq results with Volcano Plot in R
Abstract
The Volcano plot tutorial, introduced volcano plots and showed how they can be generated with the Galaxy Volcano plot tool. In this tutorial we show how you can customise a plot using the R script output from the tool.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to customise Volcano plot output in R?
Learning Objectives
- Learn how to use R to edit Volcano plot colours, points, labels and categories
Licence: Creative Commons Attribution 4.0 International
Keywords: Transcriptomics, interactive-tools
Target audience: Students
Resource type: e-learning
Version: 8
Status: Active
Prerequisites:
- Advanced R in Galaxy
- Introduction to Galaxy Analyses
- Mapping
- Quality Control
- R basics in Galaxy
- RNA Seq Counts to Viz in R
- RStudio in Galaxy
- Visualization of RNA-Seq results with Volcano Plot
Learning objectives:
- Learn how to use R to edit Volcano plot colours, points, labels and categories
Date modified: 2024-06-14
Date published: 2021-06-14
Scientific topics: Transcriptomics
External resources:
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