e-learning

Biomarker candidate identification

Abstract

A biomarker is a measurable biological component that can be routinely detected in clinical practice and reflects a disease state,

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How to mine public databases to retrieve info?
  • How to build a selection strategy by applying successive biochemical/cellular criteria to a list of gene/protein?
  • How to select biomarkers candidates using experimental information (transcriptomics & proteomics) and annotation from public databases?

Learning Objectives

  • Build a workflow implementing a strategy for the selection of tissue-leakage biomarkers using ProteoRE

Licence: Creative Commons Attribution 4.0 International

Keywords: DDA, Proteomics, human

Target audience: Students

Resource type: e-learning

Version: 9

Status: Active

Prerequisites:

Introduction to Galaxy Analyses

Learning objectives:

  • Build a workflow implementing a strategy for the selection of tissue-leakage biomarkers using ProteoRE

Date modified: 2023-11-09

Date published: 2019-06-13

Authors: David Christiany, Florence Combes, Valentin Loux, Yves Vandenbrouck

Contributors: Florence Combes, Melanie Föll, Saskia Hiltemann

Scientific topics: Proteomics


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