e-learning

Checking expected species and contamination in bacterial isolate

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Abstract

Sequencing (determining of DNA/RNA nucleotide sequence) is used all over the world for all kinds of analysis. The product of these sequencers are reads, which are sequences of detected nucleotides.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • What are the species in bacterial isolate sequencing data?

Learning Objectives

  • Run a series of tool to identify species in bacterial isolate sequencing data
  • Visualize the species abundance

Licence: Creative Commons Attribution 4.0 International

Keywords: Ecology, bacteria, illumina, microgalaxy

Target audience: Students

Resource type: e-learning

Version: 4

Status: Active

Prerequisites:

Introduction to Galaxy Analyses

Learning objectives:

  • Run a series of tool to identify species in bacterial isolate sequencing data
  • Visualize the species abundance

Date modified: 2024-06-27

Date published: 2024-03-04

Authors: Bérénice Batut

Contributors: Clea Siguret

Scientific topics: Ecology, Whole genome sequencing, Genomics, Microbiology, Microbial ecology

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