e-learning

Cleaning GBIF data for the use in Ecology

Abstract

GBIF (Global Biodiversity Information Facility, www.gbif.org) is for sure THE most remarkable biodiversity data aggregator worldwide giving access to more than 1 billion records across all taxonomic groups. The data provided via these sources are highly valuable for research. However, some issues exist concerning data heterogeneity, as they are obtained from various collection methods and sources.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How can I get ecological data from GBIF?
  • How do I check and clean the data from GBIF?
  • Which ecoinformatics techniques are important to know for this type of data?

Learning Objectives

  • Get occurrence data on a species
  • Visualize the data to understand them
  • Clean GBIF dataset for further analyses

Licence: Creative Commons Attribution 4.0 International

Keywords: Ecology, data cleaning, data management, gbif

Target audience: Students

Resource type: e-learning

Version: 5

Status: Active

Prerequisites:

Introduction to Galaxy Analyses

Learning objectives:

  • Get occurrence data on a species
  • Visualize the data to understand them
  • Clean GBIF dataset for further analyses

Date modified: 2024-06-27

Date published: 2022-10-28

Authors: Simon Benateau, Yvan Le Bras

Scientific topics: Ecology

External resources:

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