e-learning
Connecting Galaxy to a compute cluster
Abstract
The tools that are added to Galaxy can have a wide variance in the compute resources that they require and work efficiently on.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to connect Galaxy to a compute cluster?
- What are job metrics?
- What sort of information can I collect?
- Where can I find this information?
Learning Objectives
- Be familiar with the basics of installing, configuring, and using Slurm
- Understand all components of the Galaxy job running stack
- Understand how the job conf controls Galaxy's jobs subsystem
- Have a strong understanding of Galaxy job destinations
- Understand the purpose and function of Galaxy job metrics
Licence: Creative Commons Attribution 4.0 International
Keywords: Galaxy Server administration, ansible, git-gat, jobs
Target audience: Galaxy Administrators
Resource type: e-learning
Version: 57
Status: Active
Prerequisites:
- Ansible
- Galaxy Installation with Ansible
Learning objectives:
- Be familiar with the basics of installing, configuring, and using Slurm
- Understand all components of the Galaxy job running stack
- Understand how the job conf controls Galaxy's jobs subsystem
- Have a strong understanding of Galaxy job destinations
- Understand the purpose and function of Galaxy job metrics
Date modified: 2024-12-18
Date published: 2018-01-07
Contributors: Björn Grüning, Bérénice Batut, Gianmauro Cuccuru, Helena Rasche, Lucille Delisle, Marius van den Beek, Martin Čech, Nate Coraor, Niall Beard, Nicola Soranzo, Saskia Hiltemann, Simon Gladman, Tomas Klingström, Torfinn Nome
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