e-learning
Converting NCBI Data to the AnnData Format
Abstract
The goal of this tutorial is to take raw NCBI data from some published research, convert the raw data into the AnnData format then add metadata to the object so that it can be used for further processing / analysis. Here we will look at the steps to obtain, understand, and manipulate the data in order for it to be properly processed.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How do I understand NCBI data?
- How can I convert raw gene data to the AnnData format?
- How do I manually and automatically add metadata to my AnnData object?
Learning Objectives
- Analyse gene data from NCBI.
- Convert raw gene expression data into the AnnData format.
- Add metadata to the AnnData object to prepare it for analysis.
Licence: Creative Commons Attribution 4.0 International
Keywords: Single Cell, data import, data management
Target audience: Students
Resource type: e-learning
Version: 4
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Analyse gene data from NCBI.
- Convert raw gene expression data into the AnnData format.
- Add metadata to the AnnData object to prepare it for analysis.
Date modified: 2024-09-13
Date published: 2023-12-13
Contributors: Helena Rasche, Mehmet Tekman, Pavankumar Videm, Wendi Bacon
Activity log
