e-learning
CUT&RUN data analysis
Abstract
Introduction
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- Which binding motif has the transcription factor GATA1?
- What kind of quality control do I have to do?
- How to analyse and visualise CUT&RUN data?
Learning Objectives
- Apply appropriate analysis and quality control steps for CUT&RUN
- Apply an enrichment analysis and a robust peak detection
- Find protein binding motifs
Licence: Creative Commons Attribution 4.0 International
Keywords: Epigenetics
Target audience: Students
Resource type: e-learning
Version: 1
Status: Draft
Prerequisites:
- Introduction to Galaxy Analyses
- Mapping
- Quality Control
Learning objectives:
- Apply appropriate analysis and quality control steps for CUT&RUN
- Apply an enrichment analysis and a robust peak detection
- Find protein binding motifs
Date modified: 2024-03-06
Date published: 2024-03-06
Contributors: Helena Rasche, Lucille Delisle
Scientific topics: Epigenomics
External resources:
Activity log
