e-learning
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates
Abstract
Baculoviruses of the family Baculoviridae are among the most intensively
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How can the genetic variability of a baculovirus isolate be analysed?
- How can single nucleotide variants (SNVs) be identified across multiple isolates?
- How can SNVs be used as markers to analyse the composition of baculovirus isolates?
Learning Objectives
- Understand the significance of SNVs.
- Determine variable SNV positions for multiple isolates using a common reference genome.
- Transform the output (VCF file) to a readable table format.
- Interpret the SNV data to analyse the intra-isolate variability of baculoviruses.
Licence: Creative Commons Attribution 4.0 International
Keywords: Variant Analysis
Target audience: Students
Resource type: e-learning
Version: 1
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Mapping
- Quality Control
Learning objectives:
- Understand the significance of SNVs.
- Determine variable SNV positions for multiple isolates using a common reference genome.
- Transform the output (VCF file) to a readable table format.
- Interpret the SNV data to analyse the intra-isolate variability of baculoviruses.
Date modified: 2025-02-24
Date published: 2025-02-24
Contributors: Björn Grüning, Jörg Wennmann, Wolfgang Maier
Scientific topics: Genetic variation
External resources:
Activity log
