e-learning
Formation of the Super-Structures on the Inactive X
Abstract
Within a cell nucleus, the DNA is tightly-packed and the chromatin is spatially distributed with different levels and scales of organizations.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- Histone modification?
- How is a raw set of ChIP-seq data processed and analyzed?
- Where are the enriched regions for H3K27me3, H3K4me3 and CTCF on the chrX?
Learning Objectives
- Inspect the read quality
- Trim low quality bases
- Map reads on a reference genome
- Assess the quality of a ChIP-seq experiment
- Extract coverage files
- Call enriched regions or peaks
Licence: Creative Commons Attribution 4.0 International
Keywords: ChIP-seq, Epigenetics
Target audience: Students
Resource type: e-learning
Version: 12
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Mapping
- Quality Control
Learning objectives:
- Inspect the read quality
- Trim low quality bases
- Map reads on a reference genome
- Assess the quality of a ChIP-seq experiment
- Extract coverage files
- Call enriched regions or peaks
Date modified: 2023-11-09
Date published: 2018-09-17
Scientific topics: Epigenomics
External resources:
Activity log
