e-learning
From peaks to genes
Abstract
We stumbled upon a paper called "The histone acetyltransferase MOF is a key regulator of the embryonic stem cell core transcriptional network". The paper contains the analysis of possible target genes of an interesting protein called Mof. The targets were obtained by ChIP-seq in mice and the raw data is available through GEO.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to use Galaxy?
- How to get from peak regions to a list of gene names?
Learning Objectives
- Familiarize yourself with the basics of Galaxy
- Learn how to obtain data from external sources
- Learn how to run tools
- Learn how histories work
- Learn how to create a workflow
- Learn how to share your work
Licence: Creative Commons Attribution 4.0 International
Keywords: Introduction to Galaxy Analyses
Target audience: Students
Resource type: e-learning
Version: 62
Status: Active
Learning objectives:
- Familiarize yourself with the basics of Galaxy
- Learn how to obtain data from external sources
- Learn how to run tools
- Learn how histories work
- Learn how to create a workflow
- Learn how to share your work
Date modified: 2024-10-15
Date published: 2016-03-29
Contributors: Bert Droesbeke, Björn Grüning, Bérénice Batut, Clemens Blank, Cyril Monjeaud, Dave Clements, David López, Gildas Le Corguillé, Hans-Rudolf Hotz, Helena Rasche, Maria Doyle, Nate Coraor, Niall Beard, Nicola Soranzo, Saskia Hiltemann, Teresa Müller, William Durand
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