e-learning

Genome Assembly Quality Control

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Abstract

In this tutorial, we will assess the assembly quality of 2 assemblies generated with Hifiasm and Flye using PacBio HiFi reads of a species of fungi, Saccharomyces cerevisiae INSC1019 and compare the results with the actual reference genome Saccharomyces cerevisiae S288C.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • Is my genome assembly ready for annotation and/or scaffolding?

Learning Objectives

  • Assess assembly quality

Licence: Creative Commons Attribution 4.0 International

Keywords: Assembly, assembly, quality control

Target audience: Students

Resource type: e-learning

Version: 4

Status: Active

Prerequisites:

  • Introduction to Galaxy Analyses
  • Quality Control

Learning objectives:

  • Assess assembly quality

Date modified: 2023-11-09

Date published: 2022-08-26

Authors: Alexandre Cormier, Anthony Bretaudeau, Erwan Corre, Laura Leroi, Stéphanie Robin

Scientific topics: Sequence assembly

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