e-learning
Genome assembly using PacBio data
Abstract
In this tutorial, we will assemble a genome of a species of fungi in the family Mucoraceae, Mucor mucedo, from PacBio sequencing data. These data were obtained from NCBI (SRR8534473, SRR8534474 and SRR8534475). The quality of the assembly obtained will be analyzed, in particular by comparing it to a reference assembly, obtained with Falcon assembler, and available on the JGI website.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to perform a genome assembly with PacBio data ?
- How to check assembly quality ?
Learning Objectives
- Assemble a Genome with PacBio data
- Assess assembly quality
Licence: Creative Commons Attribution 4.0 International
Keywords: Assembly, assembly, pacbio
Target audience: Students
Resource type: e-learning
Version: 9
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Quality Control
Learning objectives:
- Assemble a Genome with PacBio data
- Assess assembly quality
Date modified: 2024-10-15
Date published: 2021-11-29
Scientific topics: Sequence assembly
Activity log
