e-learning
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2
Abstract
Introduction
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- What is the fungal community composition in a given soil sample?
Learning Objectives
- Understand the files needed for running LotuS2
- Learn to use datasets from Zenodo in a Galaxy tool
- Learn to upload data files to Galaxy
- Learn to run the Galaxy LotuS2 tool and what the parameters mean
- Understand the output files from LotuS2
- Understand the structure of the mapping file needed by LotuS2 to link sample metadata to a pair of FASTQ files
Licence: Creative Commons Attribution 4.0 International
Keywords: Microbiome, ecology, fungi
Target audience: Students
Resource type: e-learning
Version: 2
Status: Active
Prerequisites:
- Galaxy Basics for everyone
- Introduction to Galaxy Analyses
Learning objectives:
- Understand the files needed for running LotuS2
- Learn to use datasets from Zenodo in a Galaxy tool
- Learn to upload data files to Galaxy
- Learn to run the Galaxy LotuS2 tool and what the parameters mean
- Understand the output files from LotuS2
- Understand the structure of the mapping file needed by LotuS2 to link sample metadata to a pair of FASTQ files
Date modified: 2024-09-30
Date published: 2024-09-30
Contributors: Bethan Manley, Helena Rasche, Paul Zierep, Saskia Hiltemann, Sujai Kumar
Scientific topics: Metagenomics, Microbial ecology
External resources:
Activity log
