e-learning
Importing files from public atlases
Abstract
Introduction
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How do I use the EBI Single Cell Expression Atlas and Human Cell Atlas?
- How can I reformat and manipulate the downloaded files to create the correct input for downstream analysis?
Learning Objectives
- You will retrieve raw data from the EBI Single Cell Expression Atlas and Human Cell Atlas.
- You will manipulate the metadata and matrix files.
- You will combine the metadata and matrix files into an AnnData or Seurat object for downstream analysis.
Licence: Creative Commons Attribution 4.0 International
Keywords: Single Cell, data import, data management
Target audience: Students
Resource type: e-learning
Version: 5
Status: Active
Prerequisites:
- Combining single cell datasets after pre-processing
- Generating a single cell matrix using Alevin
- Introduction to Galaxy Analyses
Learning objectives:
- You will retrieve raw data from the EBI Single Cell Expression Atlas and Human Cell Atlas.
- You will manipulate the metadata and matrix files.
- You will combine the metadata and matrix files into an AnnData or Seurat object for downstream analysis.
Date modified: 2024-09-13
Date published: 2023-11-14
External resources:
Activity log
