e-learning
Inferring single cell trajectories with Scanpy
Abstract
Introduction
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How can I infer lineage relationships between single cells based on their RNA, without a time series?
Learning Objectives
- Execute multiple plotting methods designed to identify lineage relationships between cells
- Interpret these plots
Licence: Creative Commons Attribution 4.0 International
Keywords: 10x, MIGHTS, Single Cell, paper-replication
Target audience: Students
Resource type: e-learning
Version: 9
Status: Active
Prerequisites:
- Combining single cell datasets after pre-processing
- Filter, plot and explore single-cell RNA-seq data with Scanpy
- Generating a single cell matrix using Alevin
- Introduction to Galaxy Analyses
Learning objectives:
- Execute multiple plotting methods designed to identify lineage relationships between cells
- Interpret these plots
Date modified: 2024-10-28
Date published: 2023-12-08
Contributors: Helena Rasche, Pavankumar Videm
External resources:
Activity log
