e-learning
Inferring single cell trajectories with Scanpy (Python)
Abstract
Run the tutorial!
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How can I infer lineage relationships between single cells based on their RNA, without a time series?
Learning Objectives
- Execute multiple plotting methods designed to maintain lineage relationships between cells
- Interpret these plots
Licence: Creative Commons Attribution 4.0 International
Keywords: 10x, MIGHTS, Python, Single Cell, jupyter-notebook, paper-replication
Target audience: Students
Resource type: e-learning
Version: 18
Status: Active
Prerequisites:
- Combining single cell datasets after pre-processing
- Filter, plot and explore single-cell RNA-seq data with Scanpy
- Generating a single cell matrix using Alevin
- Introduction to Galaxy Analyses
- Use Jupyter notebooks in Galaxy
Learning objectives:
- Execute multiple plotting methods designed to maintain lineage relationships between cells
- Interpret these plots
Date modified: 2024-10-28
Date published: 2021-04-07
Contributors: Björn Grüning, Helena Rasche, Julia Jakiela, Martin Čech, Mehmet Tekman, Pavankumar Videm, Saskia Hiltemann, Wendi Bacon
Activity log
