e-learning

JupyterLab in Galaxy

View material

Abstract

JupyterLab is an Integrated Development Environment (IDE).

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How can I manipulate data using JupyterLab in Galaxy?
  • How can I start a notebook in JupyterLab?
  • How can I import/export dataset from/to my history to/from the notebook?
  • How can I save my notebook to my history?

Learning Objectives

  • Launch JupyterLab in Galaxy
  • Start a notebook
  • Import libraries
  • Use get() to import datasets from your history to the notebook
  • Use put() to export datasets from the notebook to your history
  • Save your notebook into your history

Licence: Creative Commons Attribution 4.0 International

Keywords: Using Galaxy and Managing your Data, interactive-tools

Target audience: Students

Resource type: e-learning

Version: 8

Status: Active

Learning objectives:

  • Launch JupyterLab in Galaxy
  • Start a notebook
  • Import libraries
  • Use get() to import datasets from your history to the notebook
  • Use put() to export datasets from the notebook to your history
  • Save your notebook into your history

Date modified: 2022-10-18

Date published: 2020-03-05

Authors: Anne Fouilloux

Contributors: Helena Rasche

Activity log