e-learning

Large genome assembly and polishing

View material

Abstract

Note: We recommend running this tutorial on either the Galaxy Europe or Galaxy Australia servers. Other servers (such as Galaxy main) have not yet been configured fully for all the tools in this analysis.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How can we assemble a large plant or animal genome?

Learning Objectives

  • Assemble a large genome from long reads
  • Polish the assembly
  • Assess the quality of the assembly

Licence: Creative Commons Attribution 4.0 International

Keywords: Assembly, assembly, nanopore, plants, polishing

Target audience: Students

Resource type: e-learning

Version: 11

Status: Active

Prerequisites:

  • Introduction to Galaxy Analyses
  • Quality Control

Learning objectives:

  • Assemble a large genome from long reads
  • Polish the assembly
  • Assess the quality of the assembly

Date modified: 2024-07-31

Date published: 2023-03-06

Authors: Anna Syme

Scientific topics: Sequence assembly

Activity log