e-learning

Metabarcoding/eDNA through Obitools

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Abstract

Based on this OBITools official tutorial, you will learn here how to analyze DNA metabarcoding data produced on Illumina sequencers using:

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • how to analyze DNA metabarcoding / eDNA data produced on Illumina sequencers using the OBITools?

Learning Objectives

  • Deal with paired-end data to create consensus sequences
  • Clean, filter and anlayse data to obtain strong results

Licence: Creative Commons Attribution 4.0 International

Keywords: Community composition EBV class, EBV dataset, EBV workflow, Ecology, Genetic composition EBV class, Metabarcoding, eDNA

Target audience: Students

Resource type: e-learning

Version: 11

Status: Active

Prerequisites:

Introduction to Galaxy Analyses

Learning objectives:

  • Deal with paired-end data to create consensus sequences
  • Clean, filter and anlayse data to obtain strong results

Date modified: 2024-06-27

Date published: 2022-02-28

Authors: Coline Royaux, Eric Coissac, Frédéric Boyer, Olivier Norvez, Yvan Le Bras

Scientific topics: Ecology

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