Abstract

Once you're comfortable with Circos in Galaxy, you might want to explore some real world use cases with Circos such as making a simple Genome Annotation plot, like one might want to publish alongside their genome annotation publication

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

• How can I visualise common genomic datasets like GFF3, BigWig, and VCF

Learning Objectives

• Plot an E. coli genome in Galaxy
• With tracks for the annotations, sequencing data, and variants.