e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Abstract
Sequencing (determining of DNA/RNA nucleotide sequence) is used all over the world for all kinds of analysis. The product of these sequencers are reads, which are sequences of detected nucleotides. Depending on the technique these have specific lengths (30-500bp) or using Oxford Nanopore Technologies sequencing have much longer variable lengths.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to check the quality of MiSeq data?
- What are the species in bacterial isolate sequencing data?
Learning Objectives
- Run tools to evaluate sequencing data on quality and quantity
- Evaluate the output of quality control tools
- Improve the quality of sequencing data
- Run a series of tool to identify species in bacterial isolate sequencing data
- Visualize the species abundance
Licence: Creative Commons Attribution 4.0 International
Keywords: Sequence analysis, bacteria, illumina, microgalaxy
Target audience: Students
Resource type: e-learning
Version: 3
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Run tools to evaluate sequencing data on quality and quantity
- Evaluate the output of quality control tools
- Improve the quality of sequencing data
- Run a series of tool to identify species in bacterial isolate sequencing data
- Visualize the species abundance
Date modified: 2024-10-09
Date published: 2024-07-15
Scientific topics: Sequence analysis, Whole genome sequencing, Genomics, Microbiology, Microbial ecology
Activity log
