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Quality Control

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Abstract

Why Quality Control?

Questions this will address

  • How to control quality of NGS data?
  • What are the quality parameters to check for each dataset?
  • How to improve the quality of a sequence dataset?

Learning Objectives

  • Manipulate FASTQ files
  • Control quality from a FASTQ file for short and long reads
  • Use FastQC/NanoPlot/PycoQC
  • Understand output
  • Use tools for quality correction

Licence: Creative Commons Attribution 4.0 International

Keywords: Sequence analysis

Target audience: Students

Resource type: slides

Version: 18

Status: Active

Prerequisites:

Introduction to Galaxy Analyses

Learning objectives:

  • Manipulate FASTQ files
  • Control quality from a FASTQ file for short and long reads
  • Use FastQC/NanoPlot/PycoQC
  • Understand output
  • Use tools for quality correction

Date modified: 2024-10-15

Date published: 2016-10-04

Authors: Alexandre Cormier, Anthony Bretaudeau, Bérénice Batut, Erwan Corre, Laura Leroi, Stéphanie Robin

Scientific topics: Sequence analysis

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