e-learning

Scripting Galaxy using the API and BioBlend

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Abstract

BioBlend is a Python library to enable simple interaction with Galaxy via the command line or scripts.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • What is a REST API?
  • How to interact with Galaxy programmatically?
  • Why and when should I use BioBlend?

Learning Objectives

  • Interact with Galaxy via BioBlend.

Licence: Creative Commons Attribution 4.0 International

Keywords: Development in Galaxy, jupyter-notebook

Target audience: Galaxy Administrators

Resource type: e-learning

Version: 7

Status: Active

Prerequisites:

JupyterLab

Learning objectives:

  • Interact with Galaxy via BioBlend.

Date modified: 2023-11-16

Date published: 2022-06-23

Authors: Nicola Soranzo

Contributors: Clare Sloggett, Helena Rasche, Nate Coraor, Nicola Soranzo, Nitesh Turaga, Saskia Hiltemann

Scientific topics: Software engineering

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