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Tool Dependencies and Containers

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Abstract

Planemo

Questions this will address

  • What are the advantages of running my Galaxy tool inside of a container?
  • How does Galaxy find a container to run my tool in?
  • What are BioContainers and how are they related to Galaxy?

Learning Objectives

  • Explore the differences between containerizing Galaxy and tool execution.
  • Discuss the advantages of containerizing tools.
  • Learn to build best practice tools ready to be containerized.

Licence: Creative Commons Attribution 4.0 International

Keywords: Development in Galaxy

Target audience: Galaxy Administrators

Resource type: slides

Version: 14

Status: Active

Prerequisites:

Tool development and integration into Galaxy

Learning objectives:

  • Explore the differences between containerizing Galaxy and tool execution.
  • Discuss the advantages of containerizing tools.
  • Learn to build best practice tools ready to be containerized.

Date modified: 2022-10-18

Date published: 2017-06-20

Authors: Björn Grüning, John Chilton

Scientific topics: Software engineering

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