Training material for all kinds of transcriptomics analysis.

Questions of the tutorial:

• How is raw CLIP-Seq data processed and analysed?
• How do I find binding motifs and targets for a protein (e.g., RBFOX2)?

Objectives of the tutorial:

• Remove Adapters, Barcodes and Unique Molecular Identifiers (UMIs) from the reads
• Align trimmed reads with STAR
• De-duplicate the read library
• Inspect the read mapping and de-duplication quality
• Perform peak calling with PEAKachu
• Analyse the peaks and find potential binding motifs and targets
• Check the quality of the peak calling