e-learning

Use Apptainer containers for running Galaxy jobs

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Abstract

In this tutorial you will learn how to configure Galaxy to run jobs using Apptainer containers provided by the BioContainers community.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Learning Objectives

  • Configure your Galaxy to use Apptainer and BioContainers for running jobs

Licence: Creative Commons Attribution 4.0 International

Keywords: Galaxy Server administration, ansible, git-gat, jobs

Target audience: Galaxy Administrators

Resource type: e-learning

Version: 11

Status: Active

Prerequisites:

  • Ansible
  • Galaxy Installation with Ansible

Learning objectives:

  • Configure your Galaxy to use Apptainer and BioContainers for running jobs

Date modified: 2024-06-14

Date published: 2021-01-08

Authors: Helena Rasche, Marius van den Beek, Matthias Bernt, Mira Kuntz, Torfinn Nome

Contributors: Anne Fouilloux, Anthony Bretaudeau, Björn Grüning, Gianmauro Cuccuru, Helena Rasche, Lucille Delisle, Marius van den Beek, Martin Čech, Mira Kuntz, Nate Coraor, Nicola Soranzo, Saskia Hiltemann, Simon Gladman

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