Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Comparative transcriptomics3
    • Transcriptome3
    • Transcriptomics3
    • Assembly2
    • Sequence assembly2
    • 3C technologies1
    • 3C-based methods1
    • Biodiversity1
    • Biological sequences1
    • Chromatin accessibility1
    • Chromatin accessibility assay1
    • Chromosome conformation analysis1
    • Chromosome conformation capture1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Personal genomics1
    • Sequence analysis1
    • Sequence databases1
    • Synthetic genomics1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • Galaxy8
    • FastQC2
    • IsoformSwitchAnalyzeR2
    • MultiQC2
    • PfamScan2
    • QUAST2
    • RSeQC2
    • STAR2
    • StringTie2
    • fastp2
    • gffcompare2
    • gffread2
    • pyGenomeTracks2
    • rnaQUAST2
    • BEDTools1
    • BUSCO1
    • BamTools1
    • Biopython1
    • Bwa-mem21
    • Cutadapt1
    • Galactic Circos1
    • GenomeScope 2.01
    • JBrowse1
    • Merqury1
    • Minimap21
    • SALSA1
    • SAMtools1
    • SCANPY1
    • Salmon1
    • Targetfinder.org1
    • gfastats1
    • miRDeep21
    • purge_dups1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training8
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics3
    • Assembly2
    • VGP2
    • biodiversity2
    • eukaryote2
    • pacbio2
    • plants2
    • Sequence analysis1
    • Single Cell1
    • Visualisation1
    • alternative splicing1
    • isoform switching1
    • miRNA1
    • paper-replication1
    • stress tolerance1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner4
    • Intermediate3
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International8
    • Show N_FILTERS more
    • Target audience
    • Students8
    • Show N_FILTERS more
    • Author
    • Cristóbal Gallardo
    • Helena Rasche37
    • Bérénice Batut32
    • Saskia Hiltemann24
    • Anthony Bretaudeau18
    • Anton Nekrutenko17
    • Björn Grüning17
    • Katarzyna Kamieniecka15
    • Krzysztof Poterlowicz15
    • Mehmet Tekman14
    • Subina Mehta14
    • Nicola Soranzo13
    • Simon Gladman13
    • Maria Doyle12
    • Anne Fouilloux10
    • Wendi Bacon10
    • Khaled Jum'ah9
    • Pavankumar Videm9
    • Pratik Jagtap9
    • Simon Bray9
    • Yvan Le Bras9
    • Julia Jakiela8
    • Alex Ostrovsky7
    • Anika Erxleben7
    • Dave Clements7
    • Delphine Lariviere7
    • Laura Cooper7
    • Robert Andrews7
    • Wolfgang Maier7
    • Andrew Mason6
    • Anna Syme6
    • Anne Pajon6
    • Anup Kumar6
    • Branka Franicevic6
    • Joachim Wolff6
    • Kaivan Kamali6
    • Lucille Delisle6
    • Michael Charleston6
    • Philippe Rocca-Serra6
    • Sara Morsy6
    • Stéphanie Robin6
    • Timothy J. Griffin6
    • Xenia Perez Sitja6
    • Alexandre Cormier5
    • Christopher Barnett5
    • Daniel Blankenberg5
    • Dechen Bhuming5
    • Erwan Corre5
    • Florian Christoph Sigloch5
    • James Johnson5
    • Katherine Do5
    • Kellie Snow5
    • Korneel Hens5
    • Laura Leroi5
    • Marius van den Beek5
    • Munazah Andrabi5
    • Nate Coraor5
    • Nick Juty5
    • Praveen Kumar5
    • Ray Sajulga5
    • Saskia Lawson-Tovey5
    • Bazante Sanders4
    • Clemens Blank4
    • Coline Royaux4
    • Emma Leith4
    • Florian Heyl4
    • Fotis E. Psomopoulos4
    • Mallory Freeberg4
    • Mateo Boudet4
    • Melanie Föll4
    • Vivek Bhardwaj4
    • Beatriz Serrano-Solano3
    • Belinda Phipson3
    • Engy Nasr3
    • Fidel Ramirez3
    • Hans-Rudolf Hotz3
    • Leonid Kostrykin3
    • Mira Kuntz3
    • Mo Heydarian3
    • Morgan Howells3
    • Mélanie Petera3
    • Nadia Goué3
    • Paul Zierep3
    • Tharindu Senapathi3
    • The Carpentries3
    • Workflow4Metabolomics core team3
    • Alireza Khanteymoori2
    • Anne Siegel2
    • Brandon Pickett2
    • Camila Goclowski2
    • Chao Zhang2
    • Christoph Stritt2
    • Daniela Brites2
    • Diana Chiang Jurado2
    • Esteban Perez-Wohlfeil2
    • Fabio Cumbo2
    • Friederike Dündar2
    • Galo A. Goig2
    • Gildas Le Corguillé2
    • Guillaume Gricourt2
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche
    • Björn Grüning9
    • Cristóbal Gallardo8
    • Saskia Hiltemann7
    • Bérénice Batut5
    • Beatriz Serrano-Solano3
    • Nate Coraor3
    • Anna Syme2
    • Anthony Bretaudeau2
    • Anton Nekrutenko2
    • Delphine Lariviere2
    • Linelle Abueg2
    • Lucille Delisle2
    • Pavankumar Videm2
    • Wolfgang Maier2
    • Anup Kumar1
    • Deepti Varshney1
    • Marius van den Beek1
    • Mehmet Tekman1
    • Niall Beard1
    • Nicola Soranzo1
    • Teresa Müller1
    • Wendi Bacon1
    • Willem de Koning1
    • William Durand1
    • Show N_FILTERS more
    • Resource type
    • e-learning6
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Associated Workflows8
    • Quarto/RMarkdown Notebook1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Authors: Cristóbal Gallardo

and Contributors: Helena Rasche

and Related resources: Associated Training Datasets

8 materials found
  • e-learning

    Genome-wide alternative splicing analysis

    ••• advanced
    Transcriptomics alternative splicing isoform switching
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • beginner
    Single Cell paper-replication plants
  • e-learning

    Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data

    •• intermediate
    Sequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio
  • e-learning

    Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

    •• intermediate
    Sequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio
  • e-learning

    Visualisation with Circos

    •• intermediate
    Visualisation
  • e-learning

    Whole transcriptome analysis of Arabidopsis thaliana

    • beginner
    Transcriptomics miRNA plants stress tolerance
  • slides

    Identification of non-canonical ORFs and their potential biological function

    • beginner
    Transcriptomics
  • slides

    Mapping

    • beginner
    Sequence analysis
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.