Training materials
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e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerSingle Cell paper-replication plants -
e-learning
Inferring single cell trajectories with Monocle3
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Scanpy (Python)
• beginner10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Bulk RNA Deconvolution with MuSiC
• beginnerSingle Cell transcriptomics -
e-learning
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Genomic Data Visualisation with JBrowse
•• intermediateVisualisation gmod jbrowse1 -
e-learning
MaxQuant and MSstats for the analysis of label-free data
•• intermediateProteomics label-free -
e-learning
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics