Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Exomes28
    • Genome annotation28
    • Genomes28
    • Genomics28
    • Personal genomics28
    • Synthetic genomics28
    • Viral genomics28
    • Whole genomes28
    • Algorithms23
    • Computer programming23
    • Data structures23
    • Programming languages23
    • Software development23
    • Software engineering23
    • Antimicrobial stewardship14
    • Medical microbiology14
    • Microbial genetics14
    • Microbial physiology14
    • Microbial surveillance14
    • Microbiological surveillance14
    • Microbiology14
    • Molecular infection biology14
    • Molecular microbiology14
    • Assembly13
    • Sequence assembly13
    • Biological sequences11
    • Sequence analysis11
    • Sequence databases11
    • Comparative transcriptomics5
    • Gene and protein families5
    • Gene families5
    • Gene family5
    • Gene system5
    • Genes, gene family or system5
    • Protein families5
    • Protein sequence classification5
    • Transcriptome5
    • Transcriptomics5
    • Biodiversity4
    • De novo genome sequencing4
    • Epidemiology4
    • Genome sequencing4
    • Public health4
    • Public health and epidemiology4
    • WGS4
    • Whole genome resequencing4
    • Whole genome sequencing4
    • DNA variation3
    • Genetic variation3
    • Genomic variation3
    • Mutation3
    • Polymorphism3
    • Somatic mutations3
    • AMR2
    • Animal2
    • Animal biology2
    • Animal genetics2
    • Animal physiology2
    • Animals2
    • Antibiotic resistance (ABR)2
    • Antifungal resistance2
    • Antimicrobial resistance2
    • Antiprotozoal resistance2
    • Antiviral resistance2
    • Botany2
    • Communicable disease2
    • Entomology2
    • Extensive drug resistance (XDR)2
    • Infectious disease2
    • Metazoa2
    • Multidrug resistance2
    • Multiple drug resistance (MDR)2
    • Multiresistance2
    • Pandrug resistance (PDR)2
    • Phylogenetic clocks2
    • Phylogenetic dating2
    • Phylogenetic simulation2
    • Phylogenetic stratigraphy2
    • Phylogeny2
    • Phylogeny reconstruction2
    • Plant2
    • Plant anatomy2
    • Plant biology2
    • Plant cell biology2
    • Plant ecology2
    • Plant genetics2
    • Plant physiology2
    • Plant science2
    • Plants2
    • Total drug resistance (TDR)2
    • Transmissible disease2
    • Zoology2
    • Bayesian methods1
    • Biostatistics1
    • Bottom-up proteomics1
    • Comparative genomics1
    • Computational chemistry1
    • Computational ecology1
    • Content management1
    • DNA polymorphism1
    • Show N_FILTERS more
    • Tool
    • Galaxy56
    • JBrowse13
    • FastQC8
    • BUSCO6
    • QUAST5
    • NanoPlot4
    • SAMtools4
    • Apollo3
    • BEDTools3
    • BWA3
    • Cutadapt3
    • Flye3
    • Galactic Circos3
    • STAR3
    • fastp3
    • gffread3
    • Bakta2
    • BamTools2
    • Bandage2
    • FASTQE2
    • FreeBayes2
    • HISAT22
    • Merqury2
    • MultiQC2
    • OMArk2
    • RStudio2
    • pycoQC2
    • snippy2
    • tbl2gff32
    • AUGUSTUS1
    • AmberTools1
    • BCFtools1
    • Bio3D1
    • Biopython1
    • Bowtie 21
    • Bwa-mem21
    • COMBAT-TB Workbench1
    • CheckM1
    • Circos1
    • DeepTools1
    • Diamond1
    • FEELnc1
    • Falco1
    • FastTree1
    • Filtlong1
    • GAEVAL1
    • Gromacs1
    • Helixer1
    • ISEScan1
    • Integron Finder1
    • InterProScan (EBI)1
    • Jvarkit1
    • MAFFT1
    • MAGeCK1
    • MAKER1
    • MDAnalysis1
    • NCBI Datasets1
    • Open Babel1
    • PPanGGOLiN1
    • PlasmidFinder1
    • Polypolish1
    • QualiMap1
    • RED1
    • RapidNJ1
    • RepeatMasker1
    • RepeatModeler1
    • SCANPY1
    • SNAP1
    • StringTie1
    • The Protein Data Bank (PDB)1
    • Trimmomatic1
    • Unicycler1
    • bed to protein map1
    • bx-python1
    • compute_sequence_length1
    • customProDB1
    • dRep1
    • eggNOG-mapper v21
    • funannotate1
    • gffcompare1
    • ggplot21
    • kraken21
    • orfipy1
    • pilon1
    • seqtk1
    • shovill1
    • staramr1
    • tb-profiler1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training103
    • Show N_FILTERS more
    • Keyword
    • Genome Annotation20
    • Foundations of Data Science16
    • jbrowse115
    • gmod14
    • microgalaxy14
    • Galaxy Server administration12
    • biodiversity12
    • jupyter-notebook12
    • Assembly10
    • prokaryote8
    • Development in Galaxy7
    • ansible7
    • eukaryote7
    • work-in-progress7
    • SQL5
    • Sequence analysis5
    • Transcriptomics5
    • Visualisation5
    • git-gat5
    • interactive-tools5
    • R4
    • Single Cell4
    • Teaching and Hosting Galaxy training4
    • assembly4
    • Contributing to the Galaxy Training Material3
    • Variant Analysis3
    • apollo23
    • bash3
    • illumina3
    • Introduction to Galaxy Analyses2
    • Using Galaxy and Managing your Data2
    • amr2
    • cyoa2
    • deploying2
    • eukaryota2
    • game2
    • maker2
    • nanopore2
    • one-health2
    • rmarkdown-notebook2
    • storage2
    • 10x1
    • Braker31
    • CRISPR1
    • Computational chemistry1
    • Ecology1
    • Evolution1
    • Proteomics1
    • Python1
    • Statistics and machine learning1
    • annotation1
    • automation1
    • bacteria1
    • broken1
    • cell line1
    • cloud1
    • cookbook1
    • covid191
    • essential genes1
    • evolution1
    • gbif1
    • genome editing1
    • helixer1
    • intermine1
    • jobs1
    • modeling1
    • monitoring1
    • pacbio1
    • plants1
    • proteogenomics1
    • quality control1
    • species populations EBV class1
    • terraform1
    • tools1
    • tuberculosis1
    • vgp1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner75
    • Intermediate24
    • Advanced4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International103
    • Show N_FILTERS more
    • Target audience
    • Students77
    • Galaxy Administrators19
    • Instructors7
    • Show N_FILTERS more
    • Author
    • Helena Rasche41
    • Bérénice Batut24
    • Anthony Bretaudeau21
    • Saskia Hiltemann14
    • The Carpentries12
    • Fotis E. Psomopoulos9
    • Avans Hogeschool8
    • Stéphanie Robin8
    • Alexandre Cormier7
    • Bazante Sanders7
    • Laura Leroi7
    • Simon Gladman7
    • Björn Grüning6
    • Erwan Corre6
    • Nate Coraor5
    • Anton Nekrutenko4
    • Hélène Chiapello4
    • Mateo Boudet4
    • Nicola Soranzo4
    • Valentin Loux4
    • Anna Syme3
    • Christopher Barnett3
    • Maria Christina Maniou3
    • Mehmet Tekman3
    • Toby Hodges3
    • Alex Ostrovsky2
    • Anne Fouilloux2
    • Anne Siegel2
    • Cameron Hyde2
    • Cristóbal Gallardo2
    • Dave Clements2
    • Delphine Lariviere2
    • Donny Vrins2
    • Joachim Wolff2
    • John Chilton2
    • Lucille Delisle2
    • Maria Doyle2
    • Marius van den Beek2
    • Martin Čech2
    • Matthias Bernt2
    • Michele Maroni2
    • Nadia Goué2
    • Nathan Dunn2
    • Olha Nahorna2
    • Olivier Dameron2
    • Romane LIBOUBAN2
    • Simon Bray2
    • Sofoklis Keisaris2
    • Solenne Correard2
    • Torsten Seemann2
    • Xavier Garnier2
    • Yvan Le Bras2
    • Andrea Bagnacani1
    • Anika Erxleben1
    • Anne Pajon1
    • Ava Hoffman1
    • Christophe Klopp1
    • Cyril Monjeaud1
    • Daniela Butano1
    • Dave B.1
    • Diana Chiang Jurado1
    • Elisa Michon1
    • Engy Nasr1
    • Erik Schill1
    • Estelle Ancelet1
    • Gianmauro Cuccuru1
    • Graham Etherington1
    • Guillaume Gautreau1
    • Hans-Rudolf Hotz1
    • Hervé Ménager1
    • James Johnson1
    • Jonathan Kreplak1
    • Kenji Fujihara1
    • Lain Pavot1
    • Loraine Guéguen1
    • Mallory Freeberg1
    • Marie Josse1
    • Mira Kuntz1
    • Mo Heydarian1
    • NU Knight Lab1
    • Natalie Kucher1
    • Nick Stoler1
    • Pavankumar Videm1
    • Peter van Heusden1
    • Pratik Jagtap1
    • Praveen Kumar1
    • Ray Sajulga1
    • Robert Meller1
    • Stéphanie Legras1
    • Subina Mehta1
    • Tharindu Senapathi1
    • Thoba Lose1
    • Timothy J. Griffin1
    • Torfinn Nome1
    • Twishi Gulati1
    • Wolfgang Maier1
    • Yo Yehudi1
    • Show N_FILTERS more
    • Contributor
    • Anthony Bretaudeau
    • Saskia Hiltemann519
    • Helena Rasche466
    • Björn Grüning378
    • Bérénice Batut228
    • Nicola Soranzo147
    • Martin Čech113
    • Cristóbal Gallardo95
    • Niall Beard80
    • Wendi Bacon72
    • Nate Coraor61
    • Armin Dadras60
    • Gildas Le Corguillé57
    • Marius van den Beek55
    • William Durand55
    • Mehmet Tekman44
    • Teresa Müller44
    • Simon Gladman43
    • Lucille Delisle41
    • Yvan Le Bras37
    • Pavankumar Videm36
    • Wolfgang Maier36
    • Melanie Föll34
    • Beatriz Serrano-Solano32
    • Simon Bray28
    • Anup Kumar25
    • Subina Mehta25
    • Donny Vrins23
    • Maria Doyle23
    • Peter van Heusden23
    • Anne Fouilloux20
    • Julia Jakiela20
    • Bazante Sanders19
    • Anton Nekrutenko17
    • Khaled Jum'ah17
    • Deepti Varshney16
    • Mélanie Petera14
    • Marie Josse13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Matthias Bernt12
    • Pablo Moreno12
    • David López11
    • Delphine Lariviere11
    • Katarzyna Kamieniecka11
    • Marisa Loach11
    • Mira Kuntz11
    • Paul Zierep11
    • Stéphanie Robin11
    • Gianmauro Cuccuru10
    • Leonid Kostrykin9
    • Alexandre Cormier8
    • Dave Clements8
    • John Chilton8
    • Mallory Freeberg8
    • Melissa Burke8
    • Verena Moosmann8
    • Hans-Rudolf Hotz7
    • Kaivan Kamali7
    • Katherine Do7
    • Morgan Howells7
    • Anna Syme6
    • Bert Droesbeke6
    • Christopher Barnett6
    • Clemens Blank6
    • Ekaterina Polkh6
    • Enis Afgan6
    • Florian Christoph Sigloch6
    • Florian Heyl6
    • Linelle Abueg6
    • Alex Ostrovsky5
    • Alireza Khanteymoori5
    • Clea Siguret5
    • John Davis5
    • Tomas Klingström5
    • Wandrille Duchemin5
    • olisand5
    • Catherine Bromhead4
    • Coline Royaux4
    • Daniela Schneider4
    • Dave B.4
    • Diana Chiang Jurado4
    • Eli Chadwick4
    • Fotis E. Psomopoulos4
    • Laura Leroi4
    • Phil Reed4
    • Romane LIBOUBAN4
    • Solenne Correard4
    • Amirhossein Naghsh Nilchi3
    • Andrea Bagnacani3
    • Engy Nasr3
    • Erwan Corre3
    • Fabio Cumbo3
    • Jasper Ouwerkerk3
    • Jennifer Hillman-Jackson3
    • Joachim Wolff3
    • Krzysztof Poterlowicz3
    • Maria Christina Maniou3
    • Mateo Boudet3
    • Mateusz Kuzak3
    • Show N_FILTERS more
    • Resource type
    • e-learning85
    • slides18
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets63
    • Associated Workflows42
    • Quarto/RMarkdown Notebook32
    • Jupyter Notebook (with Solutions)10
    • Jupyter Notebook (without Solutions)10
    • ansible8
    • git-gat5
    • deploying2
    • storage2
    • apollo21
    • automation1
    • broken1
    • cloud1
    • cyoa1
    • gmod1
    • interactive-tools1
    • jobs1
    • monitoring1
    • terraform1
    • tools1
    • work-in-progress1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

User: scraper

and Contributors: Anthony Bretaudeau

103 materials found
  • e-learning

    CLI Educational Game - Bashcrawl

    •• intermediate
    Software engineering Foundations of Data Science bash game jupyter-notebook
  • e-learning

    RStudio in Galaxy

    • beginner
    Using Galaxy and Managing your Data interactive-tools
  • e-learning

    Introduction to SQL

    • beginner
    Software engineering Foundations of Data Science SQL jupyter-notebook
  • e-learning

    Advanced SQL

    • beginner
    Software engineering Foundations of Data Science SQL jupyter-notebook
  • e-learning

    SQL Educational Game - Murder Mystery

    •• intermediate
    Software engineering Foundations of Data Science SQL game jupyter-notebook
  • e-learning

    R basics in Galaxy

    • beginner
    Software engineering Foundations of Data Science R interactive-tools
  • e-learning

    Advanced R in Galaxy

    •• intermediate
    Software engineering Foundations of Data Science R
  • e-learning

    Introduction to Python

    • beginner
    Software engineering Foundations of Data Science jupyter-notebook
  • e-learning

    Plotting in Python

    •• intermediate
    Software engineering Foundations of Data Science jupyter-notebook
  • e-learning

    Advanced Python

    •• intermediate
    Software engineering Foundations of Data Science jupyter-notebook
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • 10
  • 11
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.