Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Exomes30
    • Genome annotation30
    • Genomes30
    • Genomics30
    • Personal genomics30
    • Synthetic genomics30
    • Viral genomics30
    • Whole genomes30
    • Biological sequences27
    • Sequence analysis27
    • Sequence databases27
    • Assembly23
    • Sequence assembly23
    • Community analysis18
    • Environmental microbiology18
    • Microbial ecology18
    • Microbiome18
    • Molecular community analysis18
    • Metagenomics17
    • Shotgun metagenomics17
    • Antimicrobial stewardship16
    • Bottom-up proteomics16
    • Discovery proteomics16
    • MS-based targeted proteomics16
    • MS-based untargeted proteomics16
    • Medical microbiology16
    • Metaproteomics16
    • Microbial genetics16
    • Microbial physiology16
    • Microbial surveillance16
    • Microbiological surveillance16
    • Microbiology16
    • Molecular infection biology16
    • Molecular microbiology16
    • Peptide identification16
    • Protein and peptide identification16
    • Proteomics16
    • Quantitative proteomics16
    • Targeted proteomics16
    • Top-down proteomics16
    • Taxonomy13
    • Biodiversity11
    • DNA variation9
    • Genetic variation9
    • Genomic variation9
    • Mutation9
    • Polymorphism9
    • Somatic mutations9
    • Comparative transcriptomics8
    • Epigenomics8
    • Transcriptome8
    • Transcriptomics8
    • Epidemiology6
    • Public health6
    • Public health and epidemiology6
    • DNA metabarcoding5
    • De novo genome sequencing5
    • Environmental metabarcoding5
    • Gene and protein families5
    • Gene families5
    • Gene family5
    • Gene system5
    • Genes, gene family or system5
    • Genome sequencing5
    • Metabarcoding5
    • Protein families5
    • Protein sequence classification5
    • RNA metabarcoding5
    • WGS5
    • Whole genome resequencing5
    • Whole genome sequencing5
    • eDNA metabarcoding5
    • eRNA metabarcoding5
    • Bayesian methods4
    • Biostatistics4
    • Communicable disease4
    • Computational ecology4
    • Descriptive statistics4
    • Ecoinformatics4
    • Ecological informatics4
    • Ecology4
    • Ecosystem science4
    • Gaussian processes4
    • Infectious disease4
    • Inferential statistics4
    • Markov processes4
    • Metatranscriptomics4
    • Multivariate statistics4
    • Probabilistic graphical model4
    • Probability4
    • Proteogenomics4
    • Statistics4
    • Statistics and probability4
    • Transmissible disease4
    • AMR3
    • Algorithms3
    • Antibiotic resistance (ABR)3
    • Antifungal resistance3
    • Antimicrobial resistance3
    • Antiprotozoal resistance3
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • FastQC23
    • SAMtools18
    • MultiQC14
    • JBrowse12
    • BEDTools11
    • BWA11
    • fastp11
    • Cutadapt9
    • QUAST9
    • BUSCO8
    • DeepTools8
    • NanoPlot8
    • taxonomy_krona_chart8
    • Falco7
    • kraken27
    • Bandage6
    • STAR6
    • BamTools5
    • Bowtie 25
    • Flye5
    • FreeBayes5
    • GEMINI5
    • Minimap25
    • Trimmomatic5
    • BCFtools4
    • BLAST4
    • Bwa-mem24
    • KrakenTools4
    • MetaPhlAn4
    • ggplot24
    • seqtk4
    • Cardinal3
    • Diamond3
    • GenomeScope 2.03
    • HISAT23
    • Merqury3
    • Newick Utilities3
    • Stacks3
    • Trim Galore3
    • UniProt3
    • Unicycler3
    • Unipept3
    • bx-python3
    • gfastats3
    • mothur3
    • msConvert3
    • scikit-learn3
    • Apollo2
    • Bakta2
    • Biopython2
    • Bracken2
    • ChIPpeakAnno2
    • DESeq22
    • FASTQE2
    • FASTX-Toolkit2
    • GraPhlAn2
    • HUMAnN22
    • InterProScan (EBI)2
    • JBrowse 22
    • MACS2
    • MEGAHIT2
    • MaxQuant2
    • Medaka2
    • OMArk2
    • RSeQC2
    • Racon2
    • RepeatMasker2
    • Salmon2
    • SortMeRNA2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • Vcflib2
    • clusterProfiler2
    • eggNOG-mapper v22
    • ewastools2
    • export2graphlan2
    • funannotate2
    • gffread2
    • humann2
    • lofreq2
    • metaQuantome2
    • pyGenomeTracks2
    • pycoQC2
    • snippy2
    • staramr2
    • tbl2gff32
    • ABRicate1
    • AUGUSTUS1
    • Bio3D1
    • Bowtie1
    • COMBAT-TB Workbench1
    • CheckM1
    • Circos1
    • Clair31
    • Clustal 1.8 (Clustal W, Clustal X)1
    • Clustal 2 (Clustal W, Clustal X)1
    • Combine Metaphlan and HUMAnN1
    • CoverM1
    • DropletUtils1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training132
    • Show N_FILTERS more
    • Keyword
    • microgalaxy32
    • biodiversity23
    • Assembly16
    • Proteomics16
    • Microbiome15
    • jbrowse115
    • Genome Annotation14
    • gmod13
    • Variant Analysis9
    • eukaryote9
    • prokaryote9
    • Epigenetics8
    • Introduction to Galaxy Analyses8
    • Transcriptomics8
    • assembly8
    • Sequence analysis7
    • Using Galaxy and Managing your Data6
    • nanopore6
    • DDA5
    • Single Cell5
    • covid195
    • label-TMT115
    • metagenomics5
    • plants5
    • 16S4
    • Ecology4
    • Statistics and machine learning4
    • illumina4
    • interactive-tools4
    • metabarcoding4
    • one-health4
    • work-in-progress4
    • ChIP-seq3
    • EBV dataset3
    • Foundations of Data Science3
    • Genetic composition EBV class3
    • QC3
    • RAD-seq3
    • amr3
    • bacteria3
    • collections3
    • cyoa3
    • metatranscriptomics3
    • pacbio3
    • Computational chemistry2
    • Contributing to the Galaxy Training Material2
    • EBV workflow2
    • HeLa2
    • Metabolomics2
    • VGP2
    • apollo22
    • eukaryota2
    • human2
    • maker2
    • mouse2
    • workflows2
    • 10x1
    • Braker31
    • Climate1
    • EBV workflowz1
    • Evolution1
    • FAIR1
    • Heatmap1
    • MIGHTS1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • R1
    • SILAC1
    • Species population EBV class1
    • Species populations EBV class1
    • Visualisation1
    • animals1
    • annotation1
    • beer1
    • binning1
    • bulk1
    • citizen science1
    • cookbook1
    • data handling1
    • diversity1
    • drosophila1
    • español1
    • essential genes1
    • evolution1
    • functional annotation1
    • genome1
    • helixer1
    • imaging1
    • intermine1
    • miRNA1
    • network analysis1
    • paper-replication1
    • phylogenetics1
    • phylogeny1
    • plasmids1
    • polishing1
    • quality control1
    • rna-seq1
    • stress tolerance1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner105
    • Intermediate24
    • Advanced3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International132
    • Show N_FILTERS more
    • Target audience
    • Students130
    • Instructors2
    • Show N_FILTERS more
    • Author
    • Bérénice Batut37
    • Anthony Bretaudeau13
    • Saskia Hiltemann13
    • Anton Nekrutenko12
    • Subina Mehta11
    • Helena Rasche10
    • Björn Grüning9
    • Delphine Lariviere9
    • Wolfgang Maier8
    • Cristóbal Gallardo7
    • Anika Erxleben6
    • Anna Syme6
    • Nicola Soranzo6
    • Pratik Jagtap6
    • Simon Gladman6
    • Alexandre Cormier5
    • Dave Clements5
    • Dechen Bhuming5
    • Emma Leith5
    • Erwan Corre5
    • Florian Christoph Sigloch5
    • Joachim Wolff5
    • Katherine Do5
    • Laura Leroi5
    • Stéphanie Robin5
    • Alex Ostrovsky4
    • Clemens Blank4
    • Mallory Freeberg4
    • Mehmet Tekman4
    • Nadia Goué4
    • Paul Zierep4
    • Pavankumar Videm4
    • Praveen Kumar4
    • Timothy J. Griffin4
    • Vivek Bhardwaj4
    • Anup Kumar3
    • Bazante Sanders3
    • Engy Nasr3
    • Fidel Ramirez3
    • Fotis E. Psomopoulos3
    • Maria Doyle3
    • Marie Crane3
    • Melanie Föll3
    • Mo Heydarian3
    • Simon Bray3
    • Yvan Le Bras3
    • Anne Fouilloux2
    • Anne Pajon2
    • Brandon Pickett2
    • Christopher Barnett2
    • Clea Siguret2
    • Daniel Blankenberg2
    • Ekaterina Polkh2
    • Friederike Dündar2
    • Katarzyna Kamieniecka2
    • Khaled Jum'ah2
    • Krzysztof Poterlowicz2
    • Leily Rabbani2
    • Linelle Abueg2
    • Lisanna Paladin2
    • Lucille Delisle2
    • Peter van Heusden2
    • Polina Polunina2
    • Ray Sajulga2
    • Romane LIBOUBAN2
    • Sophia Hampe2
    • Teresa Müller2
    • Toby Hodges2
    • Torsten Seemann2
    • Ahmed Hamid Awan1
    • Ava Hoffman1
    • Beatriz Serrano-Solano1
    • Belinda Phipson1
    • Brigida Gallone1
    • Cameron Hyde1
    • Chao Zhang1
    • Christoph Stritt1
    • Daniel Maticzka1
    • Daniela Brites1
    • Daniela Butano1
    • David Christiany1
    • Devon Ryan1
    • Didier Debroas1
    • Dilmurat Yusuf1
    • Fabian Recktenwald1
    • Fabio Cumbo1
    • Florence Combes1
    • Florian Heyl1
    • Galo A. Goig1
    • Giulio Formenti1
    • Hans-Rudolf Hotz1
    • Harriet Dashnow1
    • Hui Tang1
    • James Johnson1
    • Jonathan Kreplak1
    • Marcella Sozzoni1
    • Maren Stillger1
    • Marius van den Beek1
    • Marzia A Cremona1
    • Mateo Boudet1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut
    • Saskia Hiltemann294
    • Helena Rasche249
    • Björn Grüning241
    • Nicola Soranzo67
    • Anthony Bretaudeau56
    • Cristóbal Gallardo55
    • Martin Čech47
    • Niall Beard42
    • Teresa Müller37
    • Armin Dadras36
    • Gildas Le Corguillé33
    • Wolfgang Maier33
    • Mehmet Tekman32
    • Pavankumar Videm32
    • Wendi Bacon32
    • Yvan Le Bras31
    • Melanie Föll30
    • William Durand29
    • Subina Mehta28
    • Nate Coraor22
    • Simon Bray22
    • Maria Doyle20
    • Beatriz Serrano-Solano19
    • Anup Kumar18
    • Anne Fouilloux15
    • Deepti Varshney15
    • Julia Jakiela14
    • Anton Nekrutenko13
    • Lucille Delisle13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Mélanie Petera11
    • Pablo Moreno11
    • Leonid Kostrykin10
    • Marius van den Beek10
    • Paul Zierep10
    • Simon Gladman10
    • Marie Josse9
    • Marisa Loach9
    • Matthias Bernt9
    • Stéphanie Robin9
    • Amirhossein Naghsh Nilchi8
    • David López8
    • Delphine Lariviere8
    • Peter van Heusden8
    • Verena Moosmann8
    • Kaivan Kamali7
    • Katherine Do7
    • Alexandre Cormier6
    • Anna Syme6
    • Daniela Schneider6
    • Diana Chiang Jurado6
    • Florian Heyl6
    • Hans-Rudolf Hotz6
    • Linelle Abueg6
    • Mallory Freeberg6
    • Morgan Howells6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Clea Siguret5
    • Clemens Blank5
    • Christopher Barnett4
    • Coline Royaux4
    • Dave Clements4
    • Florian Christoph Sigloch4
    • Bazante Sanders3
    • Donny Vrins3
    • Ekaterina Polkh3
    • Engy Nasr3
    • Fabio Cumbo3
    • Jasper Ouwerkerk3
    • Joachim Wolff3
    • Katarzyna Kamieniecka3
    • Khaled Jum'ah3
    • Mateo Boudet3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Riccardo Massei3
    • Timon Schlegel3
    • Alex Ostrovsky2
    • Anika Erxleben2
    • Carlos Chee Mendonça2
    • Christine Oger2
    • Christoph Stritt2
    • CicoZhang2
    • Enis Afgan2
    • Esteban Perez-Wohlfeil2
    • Fidel Ramirez2
    • Florence Combes2
    • Fotis E. Psomopoulos2
    • Graeme Tyson2
    • Helge Hecht2
    • Jayadev Joshi2
    • Jennifer Hillman-Jackson2
    • Jonathan Kreplak2
    • Jonathan Manning2
    • Kristina Gomoryova2
    • Laura Leroi2
    • Leily Rabbani2
    • Show N_FILTERS more
    • Resource type
    • e-learning126
    • slides6
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets120
    • Associated Workflows116
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Galaxy

and Contributors: Bérénice Batut

132 materials found
  • e-learning

    RNA Seq Counts to Viz in R

    • beginner
    Transcriptomics interactive-tools
  • e-learning

    1: RNA-Seq reads to counts

    • beginner
    Transcriptomics QC collections mouse
  • e-learning

    InterMine integration with Galaxy

    • beginner
    Using Galaxy and Managing your Data gmod intermine
  • e-learning

    Removal of human reads from SARS-CoV-2 sequencing data

    •• intermediate
    Sequence analysis covid19
  • e-learning

    Tree thinking for tuberculosis evolution and epidemiology

    • beginner
    Evolutionary biology Genomics Microbiology Phylogeny Infectious disease Evolution microgalaxy one-health phylogenetics prokaryote
  • e-learning

    SARS-CoV-2 Viral Sample Alignment and Variant Visualization

    • beginner
    Sequence analysis covid19 gmod jbrowse1
  • e-learning

    Combining single cell datasets after pre-processing

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Pre-processing of 10X Single-Cell RNA Datasets

    • beginner
    10x Single Cell
  • e-learning

    Clinical Metaproteomics 4: Quantitation

    • beginner
    Proteomics label-TMT11
  • e-learning

    Annotating a protein list identified by LC-MS/MS experiments

    • beginner
    Proteomics DDA human
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • …
  • 13
  • 14
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.