Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Algorithms12
    • Computer programming12
    • Data structures12
    • Programming languages12
    • Software development12
    • Software engineering12
    • Diffraction experiment7
    • Imaging7
    • Microscopy7
    • Microscopy imaging7
    • Optical super resolution microscopy7
    • Photonic force microscopy7
    • Photonic microscopy7
    • Biological sequences1
    • Community analysis1
    • Comparative transcriptomics1
    • DNA metabarcoding1
    • DNA variation1
    • Environmental metabarcoding1
    • Environmental microbiology1
    • Genetic variation1
    • Genomic variation1
    • Metabarcoding1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Mutation1
    • Polymorphism1
    • RNA metabarcoding1
    • Sequence analysis1
    • Sequence databases1
    • Shotgun metagenomics1
    • Somatic mutations1
    • Taxonomy1
    • Transcriptome1
    • Transcriptomics1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • Galaxy19
    • CellProfiler3
    • Galaxy Image Analysis3
    • scikit-image3
    • European Nucleotide Archive (ENA)2
    • FASTX-Toolkit2
    • FastQC2
    • SCANPY2
    • Salmon2
    • Alevin1
    • BWA1
    • Biopython1
    • DropletUtils1
    • GEMINI1
    • Nextclade1
    • PyTorch1
    • Targetfinder.org1
    • anndata1
    • fastp1
    • kraken21
    • lofreq1
    • miRDeep21
    • pangolin1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training31
    • Show N_FILTERS more
    • Keyword
    • Foundations of Data Science12
    • jupyter-notebook11
    • Imaging7
    • Using Galaxy and Managing your Data3
    • plants3
    • Climate2
    • Introduction to Galaxy Analyses2
    • Single Cell2
    • bioimaging2
    • covid192
    • interactive-tools2
    • paper-replication2
    • 16S1
    • AI1
    • MIGHTS1
    • Microbiome1
    • Transcriptomics1
    • Variant Analysis1
    • collections1
    • español1
    • imageanalysis1
    • metabarcoding1
    • miRNA1
    • microgalaxy1
    • nanopore1
    • one-health1
    • segmentation1
    • stress tolerance1
    • virology1
    • voronoi1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner25
    • Intermediate6
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International31
    • Show N_FILTERS more
    • Target audience
    • Students
    • Galaxy Administrators1
    • Show N_FILTERS more
    • Author
    • Helena Rasche13
    • Bazante Sanders11
    • Donny Vrins11
    • Beatriz Serrano-Solano5
    • The Carpentries5
    • Anne Fouilloux3
    • Cristóbal Gallardo3
    • Jean-Karim Hériché2
    • Leonid Kostrykin2
    • Miguel Roncoroni2
    • Nicola Soranzo2
    • Pavankumar Videm2
    • Riccardo Massei2
    • Ahmed Hamid Awan1
    • Allison Creason1
    • Anna Syme1
    • Anton Nekrutenko1
    • Bert Droesbeke1
    • Boris Depoortere1
    • Bérénice Batut1
    • Cameron Watson1
    • Diana Chiang Jurado1
    • Even Moa Myklebust1
    • Hui Tang1
    • Jonathan Manning1
    • Mehmet Tekman1
    • Saskia Hiltemann1
    • Wendi Bacon1
    • Wolfgang Maier1
    • Yi Sun1
    • Show N_FILTERS more
    • Contributor
    • Beatriz Serrano-Solano
    • Saskia Hiltemann395
    • Helena Rasche357
    • Björn Grüning289
    • Bérénice Batut173
    • Nicola Soranzo83
    • Anthony Bretaudeau76
    • Cristóbal Gallardo73
    • Martin Čech55
    • Wendi Bacon55
    • Niall Beard50
    • Armin Dadras42
    • Teresa Müller41
    • William Durand41
    • Mehmet Tekman40
    • Gildas Le Corguillé38
    • Pavankumar Videm35
    • Melanie Föll34
    • Yvan Le Bras34
    • Wolfgang Maier31
    • Marius van den Beek27
    • Subina Mehta27
    • Anup Kumar25
    • Simon Bray24
    • Donny Vrins22
    • Maria Doyle22
    • Peter van Heusden21
    • Nate Coraor20
    • Anne Fouilloux18
    • Bazante Sanders18
    • Julia Jakiela18
    • Anton Nekrutenko17
    • Deepti Varshney16
    • Khaled Jum'ah16
    • Lucille Delisle16
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Mélanie Petera12
    • Pablo Moreno11
    • Stéphanie Robin11
    • Katarzyna Kamieniecka10
    • Marisa Loach10
    • Matthias Bernt10
    • David López9
    • Delphine Lariviere9
    • Marie Josse9
    • Paul Zierep9
    • Simon Gladman9
    • Alexandre Cormier8
    • Dave Clements8
    • Leonid Kostrykin8
    • Mallory Freeberg8
    • Verena Moosmann8
    • Kaivan Kamali7
    • Melissa Burke7
    • Morgan Howells7
    • Anna Syme6
    • Christopher Barnett6
    • Clemens Blank6
    • Ekaterina Polkh6
    • Florian Christoph Sigloch6
    • Florian Heyl6
    • Hans-Rudolf Hotz6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Clea Siguret5
    • Linelle Abueg5
    • Wandrille Duchemin5
    • olisand5
    • Coline Royaux4
    • Diana Chiang Jurado4
    • Fotis E. Psomopoulos4
    • Laura Leroi4
    • Romane LIBOUBAN4
    • Solenne Correard4
    • Amirhossein Naghsh Nilchi3
    • Daniela Schneider3
    • Eli Chadwick3
    • Engy Nasr3
    • Erwan Corre3
    • Fabio Cumbo3
    • Jasper Ouwerkerk3
    • Jennifer Hillman-Jackson3
    • Joachim Wolff3
    • Krzysztof Poterlowicz3
    • Maria Christina Maniou3
    • Mateo Boudet3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Nadia Goué3
    • Riccardo Massei3
    • Sofoklis Keisaris3
    • Timon Schlegel3
    • Xavier Garnier3
    • Ahmed Hamid Awan2
    • Alex Ostrovsky2
    • Andrea Bagnacani2
    • Anika Erxleben2
    • Camila Goclowski2
    • Carlos Chee Mendonça2
    • Show N_FILTERS more
    • Resource type
    • e-learning28
    • slides3
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows16
    • Associated Training Datasets15
    • Jupyter Notebook (with Solutions)11
    • Jupyter Notebook (without Solutions)11
    • Quarto/RMarkdown Notebook1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Target audience: Students

and Contributors: Beatriz Serrano-Solano

31 materials found
  • e-learning

    Voronoi segmentation

    • beginner
    Imaging imageanalysis segmentation voronoi
  • e-learning

    Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy

    • beginner
    Imaging bioimaging
  • e-learning

    Using BioImage.IO models for image analysis in Galaxy

    • beginner
    Imaging AI bioimaging
  • e-learning

    A short introduction to Galaxy

    • beginner
    Introduction to Galaxy Analyses español
  • e-learning

    Submitting sequence data to ENA

    •• intermediate
    Using Galaxy and Managing your Data covid19
  • e-learning

    Generating a single cell matrix using Alevin

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • beginner
    Single Cell paper-replication plants
  • e-learning

    Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab

    • beginner
    Climate interactive-tools
  • e-learning

    Python - Globbing

    •• intermediate
    Software engineering Foundations of Data Science jupyter-notebook
  • e-learning

    Python - Subprocess

    •• intermediate
    Software engineering Foundations of Data Science jupyter-notebook
  • 1
  • 2
  • 3
  • 4
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.