Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Algorithms26
    • Computer programming26
    • Data structures26
    • Programming languages26
    • Software development26
    • Software engineering26
    • Biological sequences20
    • Exomes20
    • Genome annotation20
    • Genomes20
    • Genomics20
    • Personal genomics20
    • Sequence analysis20
    • Sequence databases20
    • Synthetic genomics20
    • Viral genomics20
    • Whole genomes20
    • Bayesian methods19
    • Biostatistics19
    • Descriptive statistics19
    • Gaussian processes19
    • Inferential statistics19
    • Markov processes19
    • Multivariate statistics19
    • Probabilistic graphical model19
    • Probability19
    • Statistics19
    • Statistics and probability19
    • Comparative transcriptomics18
    • Transcriptome18
    • Transcriptomics18
    • Bottom-up proteomics16
    • Discovery proteomics16
    • MS-based targeted proteomics16
    • MS-based untargeted proteomics16
    • Metaproteomics16
    • Peptide identification16
    • Protein and peptide identification16
    • Proteomics16
    • Quantitative proteomics16
    • Targeted proteomics16
    • Top-down proteomics16
    • Assembly15
    • Sequence assembly15
    • Antimicrobial stewardship14
    • Computational ecology14
    • Ecoinformatics14
    • Ecological informatics14
    • Ecology14
    • Ecosystem science14
    • Medical microbiology14
    • Microbial genetics14
    • Microbial physiology14
    • Microbial surveillance14
    • Microbiological surveillance14
    • Microbiology14
    • Molecular infection biology14
    • Molecular microbiology14
    • Community analysis13
    • Environmental microbiology13
    • Microbial ecology13
    • Microbiome13
    • Molecular community analysis13
    • Epigenomics12
    • Metagenomics12
    • Shotgun metagenomics12
    • DNA variation10
    • Genetic variation10
    • Genomic variation10
    • Mutation10
    • Polymorphism10
    • Somatic mutations10
    • Diffraction experiment7
    • Imaging7
    • Microscopy7
    • Microscopy imaging7
    • Optical super resolution microscopy7
    • Photonic force microscopy7
    • Photonic microscopy7
    • Taxonomy7
    • Biodiversity5
    • De novo genome sequencing5
    • Epidemiology5
    • Genome sequencing5
    • Public health5
    • Public health and epidemiology5
    • WGS5
    • Whole genome resequencing5
    • Whole genome sequencing5
    • AMR3
    • Antibiotic resistance (ABR)3
    • Antifungal resistance3
    • Antimicrobial resistance3
    • Antiprotozoal resistance3
    • Antiviral resistance3
    • Communicable disease3
    • DNA metabarcoding3
    • Environmental metabarcoding3
    • Exometabolomics3
    • Extensive drug resistance (XDR)3
    • Show N_FILTERS more
    • Tool
    • Galaxy183
    • FastQC24
    • SAMtools19
    • MultiQC15
    • BEDTools13
    • BWA12
    • SCANPY11
    • Cutadapt10
    • DeepTools10
    • scikit-learn10
    • Falco8
    • fastp8
    • taxonomy_krona_chart7
    • BamTools6
    • Bowtie 26
    • FreeBayes6
    • NanoPlot6
    • STAR6
    • Trimmomatic6
    • ggplot26
    • Bandage5
    • GEMINI5
    • Galaxy Image Analysis5
    • JBrowse5
    • scikit-image5
    • MACS4
    • MaxQuant4
    • MetaPhlAn4
    • QUAST4
    • Trim Galore4
    • anndata4
    • kraken24
    • BCFtools3
    • BLAST3
    • Bwa-mem23
    • Diamond3
    • DropletUtils3
    • FASTX-Toolkit3
    • Flye3
    • Galactic Circos3
    • GraPhlAn3
    • HISAT23
    • MSstats3
    • Minimap23
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC3
    • RSeQC3
    • Salmon3
    • SortMeRNA3
    • Stacks3
    • export2graphlan3
    • humann3
    • pyGenomeTracks3
    • snpEff3
    • Bakta2
    • Biopython2
    • Cardinal2
    • CellProfiler2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • DESeq22
    • FASTQE2
    • GOEnrichment2
    • GOseq2
    • HUMAnN22
    • InterProScan (EBI)2
    • JBrowse 22
    • KrakenTools2
    • MEME2
    • Newick Utilities2
    • RStudio2
    • SRA Software Toolkit2
    • SeqCode2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • UniProt2
    • Unicycler2
    • Unipept2
    • Vcflib2
    • Workflow4Metabolomics2
    • annotatemyids2
    • bx-python2
    • clusterProfiler2
    • ewastools2
    • gfastats2
    • lofreq2
    • mothur2
    • msConvert2
    • pycoQC2
    • seqtk2
    • staramr2
    • tbl2gff32
    • xcms2
    • ABRicate1
    • Alevin1
    • BUSCO1
    • Bowtie1
    • Bracken1
    • ChiRA1
    • Circos1
    • Clair31
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training318
    • Show N_FILTERS more
    • Keyword
    • Galaxy Server administration39
    • Single Cell35
    • microgalaxy21
    • Contributing to the Galaxy Training Material20
    • Statistics and machine learning19
    • biodiversity19
    • Transcriptomics18
    • Development in Galaxy17
    • Proteomics16
    • ansible15
    • Ecology14
    • Using Galaxy and Managing your Data14
    • git-gat14
    • Epigenetics12
    • Introduction to Galaxy Analyses12
    • Microbiome12
    • earth-system12
    • interactive-tools12
    • jupyter-notebook12
    • paper-replication12
    • Assembly11
    • MIGHTS11
    • Teaching and Hosting Galaxy training10
    • Variant Analysis10
    • Climate9
    • FAIR Data, Workflows, and Research9
    • Genome Annotation8
    • ocean8
    • Foundations of Data Science7
    • Imaging7
    • plants7
    • prokaryote7
    • work-in-progress7
    • DDA6
    • Sequence analysis6
    • data stewardship6
    • fair6
    • jbrowse16
    • 10x5
    • EBV dataset5
    • EBV workflow5
    • assembly5
    • dmp5
    • elixir5
    • gmod5
    • jobs5
    • label-TMT115
    • train-the-trainers5
    • transcriptomics5
    • QC4
    • cyoa4
    • illumina4
    • mouse4
    • nanopore4
    • storage4
    • workflows4
    • ChIP-seq3
    • Galaxy Community Building3
    • Genetic composition EBV class3
    • Metabolomics3
    • RAD-seq3
    • Visualisation3
    • amr3
    • bacteria3
    • bioimaging3
    • covid193
    • data import3
    • data management3
    • deploying3
    • monitoring3
    • one-health3
    • ro-crate3
    • 16S2
    • CoDex2
    • Community2
    • Data Paper2
    • EML2
    • FAIR2
    • HeLa2
    • Metadata2
    • SIG2
    • Species population EBV class2
    • Species populations EBV class2
    • collections2
    • deep-learning2
    • essential genes2
    • eukaryote2
    • jupyter-lab2
    • machine-learning2
    • marine omics2
    • metabarcoding2
    • metagenomics2
    • metatranscriptomics2
    • modeling2
    • netcdf data2
    • rmarkdown-notebook2
    • subdomain2
    • AI1
    • Biodiversity1
    • CRISPR1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Intermediate66
    • Advanced9
    • Not specified1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International318
    • Show N_FILTERS more
    • Target audience
    • Students229
    • Galaxy Administrators56
    • Instructors33
    • Show N_FILTERS more
    • Author
    • Bérénice Batut63
    • Helena Rasche54
    • Saskia Hiltemann36
    • Björn Grüning35
    • Anton Nekrutenko18
    • Nicola Soranzo17
    • Simon Gladman17
    • Nate Coraor14
    • Yvan Le Bras14
    • Marie Josse12
    • Mehmet Tekman12
    • Wendi Bacon12
    • Anup Kumar11
    • Anne Fouilloux10
    • Anthony Bretaudeau10
    • Maria Doyle10
    • Subina Mehta10
    • Fotis E. Psomopoulos9
    • Julia Jakiela9
    • Pavankumar Videm9
    • Anika Erxleben8
    • Cristóbal Gallardo8
    • Dave Clements8
    • Katarzyna Kamieniecka8
    • Khaled Jum'ah8
    • Krzysztof Poterlowicz8
    • Delphine Lariviere7
    • Joachim Wolff7
    • Daniel Blankenberg6
    • Melanie Föll6
    • Morgan Howells6
    • Paul Zierep6
    • Wolfgang Maier6
    • Allegra Via5
    • Andrew Mason5
    • Anne Pajon5
    • Branka Franicevic5
    • Clemens Blank5
    • Dechen Bhuming5
    • ELIXIR Goblet Train the Trainers5
    • Katherine Do5
    • Kellie Snow5
    • Korneel Hens5
    • Laura Cooper5
    • Marius van den Beek5
    • Martin Čech5
    • Munazah Andrabi5
    • Nick Juty5
    • Patricia Palagi5
    • Philippe Rocca-Serra5
    • Pratik Jagtap5
    • Robert Andrews5
    • Sara Morsy5
    • Saskia Lawson-Tovey5
    • Xenia Perez Sitja5
    • Alex Ostrovsky4
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Anna Syme4
    • Beatriz Serrano-Solano4
    • Diana Chiang Jurado4
    • Erwan Corre4
    • John Chilton4
    • Leonid Kostrykin4
    • Mallory Freeberg4
    • Mira Kuntz4
    • Simon Bray4
    • Stéphanie Robin4
    • Vivek Bhardwaj4
    • Alexandre Cormier3
    • Bazante Sanders3
    • Belinda Phipson3
    • Cyril Monjeaud3
    • Emma Leith3
    • Engy Nasr3
    • Fidel Ramirez3
    • Florian Christoph Sigloch3
    • Florian Heyl3
    • Gianmauro Cuccuru3
    • Hans-Rudolf Hotz3
    • Laila Los3
    • Laura Leroi3
    • Lucille Delisle3
    • Marisa Loach3
    • Mo Heydarian3
    • Nadia Goué3
    • Solenne Correard3
    • Youri Hoogstrate3
    • Aysam Guerler2
    • Cameron Hyde2
    • Camila Goclowski2
    • Christopher Barnett2
    • Coline Royaux2
    • Dannon Baker2
    • Ekaterina Polkh2
    • Eli Chadwick2
    • Friederike Dündar2
    • Gildas Le Corguillé2
    • Harriet Dashnow2
    • James Johnson2
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning
    • Saskia Hiltemann437
    • Helena Rasche392
    • Bérénice Batut190
    • Nicola Soranzo134
    • Martin Čech101
    • Cristóbal Gallardo83
    • Anthony Bretaudeau75
    • Niall Beard73
    • Wendi Bacon65
    • Nate Coraor59
    • Armin Dadras54
    • Gildas Le Corguillé50
    • William Durand50
    • Mehmet Tekman43
    • Marius van den Beek41
    • Simon Gladman41
    • Teresa Müller40
    • Lucille Delisle37
    • Yvan Le Bras37
    • Pavankumar Videm35
    • Beatriz Serrano-Solano26
    • Wolfgang Maier26
    • Maria Doyle22
    • Anne Fouilloux20
    • Julia Jakiela20
    • Subina Mehta19
    • Anup Kumar18
    • Khaled Jum'ah17
    • Melanie Föll16
    • Simon Bray15
    • Deepti Varshney14
    • Donny Vrins14
    • Marie Josse14
    • Bazante Sanders13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Matthias Bernt12
    • Pablo Moreno12
    • Paul Zierep12
    • Anton Nekrutenko11
    • Katarzyna Kamieniecka11
    • Marisa Loach11
    • Mira Kuntz11
    • Mélanie Petera11
    • Peter van Heusden11
    • David López10
    • Gianmauro Cuccuru10
    • Delphine Lariviere9
    • Leonid Kostrykin9
    • Verena Moosmann8
    • Amirhossein Naghsh Nilchi7
    • Florian Heyl7
    • Hans-Rudolf Hotz7
    • John Chilton7
    • Kaivan Kamali7
    • Katherine Do7
    • Melissa Burke7
    • Morgan Howells7
    • Alexandre Cormier6
    • Daniela Schneider6
    • Dave Clements6
    • Ekaterina Polkh6
    • Alex Ostrovsky5
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Diana Chiang Jurado5
    • John Davis5
    • Mallory Freeberg5
    • Sabine Österle5
    • Solenne Correard5
    • Stéphanie Robin5
    • Tomas Klingström5
    • Anna Syme4
    • Clea Siguret4
    • Coline Royaux4
    • Daniel Sobral4
    • Dave B.4
    • Eli Chadwick4
    • Enis Afgan4
    • Fotis E. Psomopoulos4
    • Phil Reed4
    • Andrea Bagnacani3
    • Catherine Bromhead3
    • Clemens Blank3
    • David Philip Judge3
    • Eija Korpelainen3
    • Engy Nasr3
    • Gautier Sarah3
    • Jean-François Dufayard3
    • Jennifer Hillman-Jackson3
    • Joachim Wolff3
    • Keiler Collier3
    • Krzysztof Poterlowicz3
    • Laura Leroi3
    • Mateo Boudet3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Nuwan Goonasekera3
    • Pedro Fernandes3
    • Show N_FILTERS more
    • Resource type
    • e-learning262
    • slides56
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets196
    • Associated Workflows162
    • Quarto/RMarkdown Notebook110
    • ansible16
    • git-gat14
    • Jupyter Notebook (with Solutions)10
    • Jupyter Notebook (without Solutions)10
    • jobs5
    • monitoring3
    • deploying2
    • storage2
    • workflows2
    • Community1
    • DDA1
    • SIG1
    • authentication1
    • automation1
    • broken1
    • cloud1
    • cyoa1
    • features1
    • interactive-tools1
    • ro-crate1
    • terraform1
    • tools1
    • training1
    • Show N_FILTERS more
  • Show disabled materials
  • Hide archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Difficulty level: Beginner

and Contributors: Björn Grüning

and Include archived: true

318 materials found
  • e-learning

    Creation of the labs in the different Galaxy instances for your community

    • beginner
    CoDex Community Galaxy Community Building SIG
  • e-learning

    Nitrate DMQC for autonomous platforms such as Argo floats

    • beginner
    Climate biogeochemical earth-system ocean
  • e-learning

    Introduction to Digital Humanities in Galaxy

    • beginner
    Digital Humanities text mining
  • e-learning

    Identifing Survival Markers of Brain tumor with Flexynesis

    • beginner
    Statistics and probability Statistics and machine learning
  • e-learning

    Modeling Breast Cancer Subtypes with Flexynesis

    • beginner
    Statistics and probability Statistics and machine learning
  • e-learning

    Prepare Data from CbioPortal for Flexynesis Integration

    • beginner
    Statistics and probability Statistics and machine learning
  • e-learning

    Unsupervised Analysis of Bone Marrow Cells with Flexynesis

    • beginner
    Statistics and probability Statistics and machine learning
  • e-learning

    Life Traits Ecoregionalization workflow

    • beginner
    Ecology biodiversity
  • e-learning

    Voronoi segmentation

    • beginner
    Imaging imageanalysis segmentation voronoi
  • slides

    Genome assembly and assembly QC - Introduction short version

    • beginner
    Sequence assembly Assembly
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • …
  • 31
  • 32
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.