Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Genome sequencing
    • Assembly5
    • Sequence assembly5
    • Epidemiology4
    • Exomes4
    • Genome annotation4
    • Genomes4
    • Genomics4
    • Personal genomics4
    • Public health4
    • Public health and epidemiology4
    • Synthetic genomics4
    • Viral genomics4
    • Whole genomes4
    • Antimicrobial stewardship3
    • Biological sequences3
    • Community analysis3
    • Environmental microbiology3
    • Medical microbiology3
    • Metagenomics3
    • Microbial ecology3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Microbiome3
    • Molecular community analysis3
    • Molecular infection biology3
    • Molecular microbiology3
    • Sequence analysis3
    • Sequence databases3
    • Shotgun metagenomics3
    • Taxonomy3
    • Comparative transcriptomics2
    • De novo genome sequencing2
    • Transcriptome2
    • Transcriptomics2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Biodiversity1
    • Communicable disease1
    • DNA metabarcoding1
    • DNA variation1
    • Disease1
    • Environmental metabarcoding1
    • Extensive drug resistance (XDR)1
    • Genetic variation1
    • Genomic variation1
    • Infectious disease1
    • Metabarcoding1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Mutation1
    • Pandrug resistance (PDR)1
    • Pathology1
    • Polymorphism1
    • RNA metabarcoding1
    • Somatic mutations1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • fastp
    • Bandage2
    • FastQC2
    • Galaxy2
    • QUAST2
    • Bwa-mem21
    • Falco1
    • Filtlong1
    • Flye1
    • NanoPlot1
    • Polypolish1
    • shovill1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training2
    • Show N_FILTERS more
    • Keyword
    • Assembly2
    • assembly2
    • microgalaxy2
    • amr1
    • illumina1
    • nanopore1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International2
    • Show N_FILTERS more
    • Target audience
    • Students2
    • Show N_FILTERS more
    • Author
    • Bazante Sanders2
    • Bérénice Batut2
    • Show N_FILTERS more
    • Contributor
    • Cristóbal Gallardo
    • Björn Grüning3
    • Bérénice Batut3
    • Saskia Hiltemann3
    • Anthony Bretaudeau2
    • Bazante Sanders2
    • Helena Rasche2
    • Miaomiao Zhou2
    • Teresa Müller2
    • Verena Moosmann2
    • Wolfgang Maier2
    • Clea Siguret1
    • Deepti Varshney1
    • Matúš Kalaš1
    • Nate Coraor1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets2
    • Associated Workflows2
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Genome sequencing

and Tools: fastp

and Contributors: Cristóbal Gallardo

2 materials found
  • e-learning

    Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.