Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Environmental microbiology
    • Biological sequences3
    • Community analysis3
    • Metagenomics3
    • Microbial ecology3
    • Microbiome3
    • Molecular community analysis3
    • Sequence analysis3
    • Sequence databases3
    • Shotgun metagenomics3
    • Taxonomy3
    • Assembly1
    • DNA metabarcoding1
    • Disease1
    • Environmental metabarcoding1
    • Epidemiology1
    • Function analysis1
    • Functional analysis1
    • Metabarcoding1
    • Metatranscriptomics1
    • Pathology1
    • Protein function analysis1
    • Protein function prediction1
    • Public health1
    • Public health and epidemiology1
    • RNA metabarcoding1
    • Sequence assembly1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • Galaxy3
    • taxonomy_krona_chart3
    • FastQC2
    • HUMAnN22
    • MetaPhlAn2
    • MultiQC2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Cutadapt1
    • FastTree1
    • Flye1
    • GraPhlAn1
    • KrakenTools1
    • Krona1
    • MLST1
    • Medaka1
    • Minimap21
    • NanoPlot1
    • Newick Utilities1
    • SAMtools1
    • SortMeRNA1
    • export2graphlan1
    • fastp1
    • ggplot21
    • humann1
    • kraken21
    • mothur1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Microbiome3
    • microgalaxy3
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • cyoa1
    • metatranscriptomics1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Saskia Hiltemann2
    • Emma Leith1
    • Engy Nasr1
    • Paul Zierep1
    • Pratik Jagtap1
    • Praveen Kumar1
    • Ray Sajulga1
    • Subina Mehta1
    • Show N_FILTERS more
    • Contributor
    • Engy Nasr
    • Saskia Hiltemann18
    • Bérénice Batut17
    • Helena Rasche13
    • Björn Grüning9
    • Paul Zierep7
    • Deepti Varshney5
    • Teresa Müller5
    • Cristóbal Gallardo4
    • Clea Siguret3
    • Mallory Freeberg2
    • Melanie Föll2
    • Niall Beard2
    • Nicola Soranzo2
    • Subina Mehta2
    • Willem de Koning2
    • William Durand2
    • Wolfgang Maier2
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Bethan Manley1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Matthias Bernt1
    • Nate Coraor1
    • Nikos Pechlivanis1
    • Nuwan Goonasekera1
    • Siyu Chen1
    • Sophia Hampe1
    • Sujai Kumar1
    • Tarnima Omara1
    • Verena Moosmann1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Environmental microbiology

and Contributors: Engy Nasr

and Resource type: e-learning

3 e-learning materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Analyses of metagenomics data - The global picture

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding Microbiome microgalaxy
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.