Training materials
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e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
Python - Coding Style
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
e-learning
Submitting workflows to LifeMonitor
• beginnerFAIR Data, Workflows, and Research ro-crate -
e-learning
FAIR Galaxy Training Material
• beginnerFAIR Data, Workflows, and Research fair gtn training -
e-learning
Data Manipulation Olympics
• beginnerSoftware engineering Foundations of Data Science cyoa -
e-learning
RNA-seq Alignment with STAR
• beginnerTranscriptomics