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Difficulty level: Beginner

and Target audience: Students

and Contributors: Marisa Loach

10 materials found
  • slides

    Single-cell Formats and Resources

    • beginner
    Single Cell
  • e-learning

    Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

    • beginner
    Single Cell data management transcriptomics
  • e-learning

    Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

    • beginner
    Single Cell data management
  • e-learning

    Inferring single cell trajectories with Scanpy

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Removing the effects of the cell cycle

    • beginner
    Single Cell
  • e-learning

    Generating a single cell matrix using Alevin

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Combining single cell datasets after pre-processing

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Filter, plot and explore single-cell RNA-seq data with Scanpy

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Comparing inferred cell compositions using MuSiC deconvolution

    • beginner
    Single Cell transcriptomics
  • slides

    Automated Cell Annotation

    • beginner
    Single Cell
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TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.