Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Epidemiology
    • Community analysis7
    • Environmental microbiology7
    • Metagenomics7
    • Microbial ecology7
    • Microbiome7
    • Molecular community analysis7
    • Shotgun metagenomics7
    • Biological sequences6
    • Sequence analysis6
    • Sequence databases6
    • Taxonomy5
    • Algorithms2
    • Computer programming2
    • Data structures2
    • Exomes2
    • Function analysis2
    • Functional analysis2
    • Genome annotation2
    • Genomes2
    • Genomics2
    • Metatranscriptomics2
    • Personal genomics2
    • Programming languages2
    • Protein function analysis2
    • Protein function prediction2
    • Software development2
    • Software engineering2
    • Synthetic genomics2
    • Viral genomics2
    • Whole genomes2
    • Antimicrobial stewardship1
    • Assembly1
    • DNA metabarcoding1
    • De novo genome sequencing1
    • Disease1
    • Environmental metabarcoding1
    • Functional genomics1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genome sequencing1
    • Medical microbiology1
    • Metabarcoding1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Mobile genetic elements1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • Protein families1
    • Protein sequence classification1
    • Public health1
    • Public health and epidemiology1
    • RNA metabarcoding1
    • Sequence assembly1
    • Transposons1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • FastQC1
    • FastTree1
    • Flye1
    • Galaxy1
    • KrakenTools1
    • MLST1
    • Medaka1
    • Minimap21
    • MultiQC1
    • NanoPlot1
    • Newick Utilities1
    • SAMtools1
    • fastp1
    • ggplot21
    • kraken21
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training1
    • Show N_FILTERS more
    • Keyword
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • cyoa1
    • microgalaxy1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Students1
    • Show N_FILTERS more
    • Author
    • Bérénice Batut1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Paul Zierep
    • Björn Grüning6
    • Bérénice Batut6
    • Helena Rasche6
    • Saskia Hiltemann6
    • Anthony Bretaudeau4
    • Cristóbal Gallardo4
    • Bazante Sanders3
    • Deepti Varshney3
    • Miaomiao Zhou3
    • Wolfgang Maier3
    • pimarin2
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Matúš Kalaš1
    • Mélanie Petera1
    • Nate Coraor1
    • Peter van Heusden1
    • Teresa Müller1
    • Verena Moosmann1
    • Willem de Koning1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets1
    • Associated Workflows1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Epidemiology

and Contributors: Paul Zierep

and Resource type: e-learning

1 e-learning material found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.